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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1161 [new locus tag: SA_RS06595 ]
  • pan locus tag?: SAUPAN003696000
  • symbol: SA1161
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1161 [new locus tag: SA_RS06595 ]
  • symbol: SA1161
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1322105..1322959
  • length: 855
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGTCTTTTTATGTTGTACTTATCATTATCATTGTAGCATTAATTGGTATATTAGTTTTA
    AATCAAAGGTATAGTAATAGTAAAATAGATACCGAAGTTTATGCAAGAAAGCAACTTATT
    AAAAAGAATAAAGCATTAAGTGCAGAAAATGCTGAATTAAGAAGTCAAATGCTGAGTTCT
    AATAATGATGTTGGACACCATGCATACAAAAATGCTAAAAGAGAATTACGCAAGATTTTA
    GATAGCTATCTCGAAAATGGTAAATTAAAATATTACGATATTATCGTTACAAGCAATTTA
    GCTACTAAACATCCGTTTTTCGAGTATGCACGTTCATTTGATTTTATCATTGTTTCAGAT
    ATCGGTTTAATAAACGTTGATGTAAAAAGTTGGGGTGAAAAAACATTTTATCACTTTGAT
    GTACCTGATGAGCATGATACAGAAATGAGCAATAGTAATATTGAAAAAGTTGTCGGTCAT
    TACATTAGCCAGCAATATCATGATCAGTTTAATTCATCAAGAAAGTCTATCTATACTTTT
    ACAGAAACAGTTCAACCAAATCGTGTTATTTATGATTTTTATGATTATGATCCATATCAA
    TTAGCAGCAAATAATGCTAAAGCATTAAAGGATCATATTGAACAAAACTTTAACTTTAAA
    GTCCAAAGTACCGGTGTTATTTACTTTAGTGATGGTACAGTTAATATCATTCAAGGTTCT
    GAAGAAAGAGATAAATATGTTGATACCGTTTCAACAAAATCTTCATTACGACGTATTATT
    AGCGAAGCCATAGAGCTATCTAAACACCCTTTAAATAAAGAACAGGTTGATCAAATCACA
    GCTATATTCAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    855

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1161 [new locus tag: SA_RS06595 ]
  • symbol: SA1161
  • description: hypothetical protein
  • length: 284
  • theoretical pI: 7.04044
  • theoretical MW: 32868.8
  • GRAVY: -0.411972

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 14.7)
  • TheSEED  :
    • FIG01108654: hypothetical protein
  • PFAM:
    PDDEXK (CL0236) NERD; Nuclease-related domain (PF08378; HMM-score: 22.1)
    and 6 more
    AB_hydrolase (CL0028) Abhydrolase_4; TAP-like protein (PF08386; HMM-score: 15.1)
    no clan defined NYD-SP28_assoc; Sperm tail C-terminal domain (PF14775; HMM-score: 14.9)
    RNase_H (CL0219) OrfB_IS605; Probable transposase (PF01385; HMM-score: 14.6)
    no clan defined YabB; Initiation control protein YabA (PF06156; HMM-score: 14)
    SpoVIF; Stage VI sporulation protein F (PF14069; HMM-score: 13.4)
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 5.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.384471
    • TAT(Tat/SPI): 0.00153
    • LIPO(Sec/SPII): 0.039319
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSFYVVLIIIIVALIGILVLNQRYSNSKIDTEVYARKQLIKKNKALSAENAELRSQMLSSNNDVGHHAYKNAKRELRKILDSYLENGKLKYYDIIVTSNLATKHPFFEYARSFDFIIVSDIGLINVDVKSWGEKTFYHFDVPDEHDTEMSNSNIEKVVGHYISQQYHDQFNSSRKSIYTFTETVQPNRVIYDFYDYDPYQLAANNAKALKDHIEQNFNFKVQSTGVIYFSDGTVNIIQGSEERDKYVDTVSTKSSLRRIISEAIELSKHPLNKEQVDQITAIFK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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