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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1238 [new locus tag: SA_RS07030 ]
  • pan locus tag?: SAUPAN003822000
  • symbol: SA1238
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1238 [new locus tag: SA_RS07030 ]
  • symbol: SA1238
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1410623..1411759
  • length: 1137
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAA
    GAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTA
    GACACAATCAGTAAACAAATTAACCCTTTAGACAATGAAGGTTTATTAGCGTTTGGTTCT
    GATTTACAGAAACAAATGTCTCAATTTTCACATCAAATGTTGGATGAAGTACAAAGTAAA
    GATGTTGGTCCTATTGGAGATACTTTGTCAGATCTAATGTCAAAACTAAAGTCAGTTAAT
    CCAAATGAGTTAAATACTGATAAACCATCTATGTTAAAAAGAATTTTTAGCAGAGCAAAG
    TCGTCTATCAATGAAATCTTTTCAAGAATGCAATCAGTTAGTGCTCAAGTCGATCGCATA
    ACGATTCAACTGCAGAAACATCAAACACATTTAACAAGAGATATTGAATTATTAGATACG
    CTATATGATAAAAACAAACAATACTTTGATGACTTATCATTGCATATCATTGCTGCACAG
    CAAAAAAAGTTGCAATTAGAAAATGAAAAGCTACCACAATTGCAACAGCAAGCGCAGCAA
    TCCACTAATCAAATGGATATTCAACAAGTTTCAGATATGCAGCAATTTATAGATAGACTA
    GATAAACGCATATATGACTTACAGCTTTCAAGACAAATAGCTTTGCAAACTGCGCCACAA
    ATTCGTATGATTCAAAATGTTAATCAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTG
    ACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGT
    AATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAAT
    GCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGCGTGGCATTGTT
    GATCTTGATACATTGAAACGTACACAGCGTAACATTATTGAGACAATTGAAGAAACATTA
    ATTATTCAACAACACGGTCGCGAAGAACGACAATTAGCTGAAAAAGAATTACAACAATTA
    GAACAAGATTTAAAGTCACATTTAGTGAACATCAAAGGACCGAATAAACAATCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1137

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1238 [new locus tag: SA_RS07030 ]
  • symbol: SA1238
  • description: hypothetical protein
  • length: 378
  • theoretical pI: 5.96193
  • theoretical MW: 43423
  • GRAVY: -0.687302

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Toxic anion resistance protein TelA
  • PFAM:
    no clan defined TelA; Toxic anion resistance protein (TelA) (PF05816; HMM-score: 395.3)
    and 1 more
    HTH (CL0123) Dimerisation; Dimerisation domain (PF08100; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003906
    • TAT(Tat/SPI): 0.001439
    • LIPO(Sec/SPII): 0.000649
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTENKSFKESHPLDDFISDKELSNTTIQKEKLTIEQQKQVDTISKQINPLDNEGLLAFGSDLQKQMSQFSHQMLDEVQSKDVGPIGDTLSDLMSKLKSVNPNELNTDKPSMLKRIFSRAKSSINEIFSRMQSVSAQVDRITIQLQKHQTHLTRDIELLDTLYDKNKQYFDDLSLHIIAAQQKKLQLENEKLPQLQQQAQQSTNQMDIQQVSDMQQFIDRLDKRIYDLQLSRQIALQTAPQIRMIQNVNQALAEKIQSSILTSIPLWKNQMAIALTLMRQRNAVAAQRAVTDTTNDLLTANAEMLKQNAIETATENERGIVDLDTLKRTQRNIIETIEETLIIQQHGREERQLAEKELQQLEQDLKSHLVNIKGPNKQS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Alexander Scherl, Patrice François, Manuela Bento, Jacques M Deshusses, Yvan Charbonnier, Véronique Converset, Antoine Huyghe, Nadia Walter, Christine Hoogland, Ron D Appel, Jean-Charles Sanchez, Catherine G Zimmermann-Ivol, Garry L Corthals, Denis F Hochstrasser, Jacques Schrenzel
Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.
J Microbiol Methods: 2005, 60(2);247-57
[PubMed:15590099] [WorldCat.org] [DOI] (P p)

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