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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1237 [new locus tag: SA_RS07025 ]
  • pan locus tag?: SAUPAN003821000
  • symbol: SA1237
  • pan gene symbol?: xpaC
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1237 [new locus tag: SA_RS07025 ]
  • symbol: SA1237
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1409968..1410591
  • length: 624
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    GTGAGATATAATATTTCTCATATATTTGGGGTGTTAGTGGGAATTCCTGTAGCGTTTTTA
    ACAAGCATATTTGGGATGATTGCACTTGATGTATCTTTTTTAATTGATATGTCTATTGGT
    ATTGTTGGCTTTTTAATGACATACCTACCGATACAAAAACTCACTTCACGCAAATATTTA
    AACGAAATTGGTTTGACTAGAAAAGACTATCGCTATATTCGAAATCAGTTAAATCATACA
    CACCAAAAACTTAGAGGTATTTTAAAAACGTATGTCAATATAAGATCAATTAAAGATTTT
    AGGCAGATTAATGATATATACCAAATTTCACGTTCTATTTATACGACAGTTAGACAGAGA
    CCTGCATCATTTTATAAAGTTGAAGGCTTTTTTTATTCTCATATTGATAATGCTTTAAAT
    TTGGTTGATGCATATACACGTCTAGCAAAAATGCCCAAAAAATCAATTAATGAACAGCAA
    AAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTA
    AAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTA
    CATCAAAAACATCATCAAGATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    624

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1237 [new locus tag: SA_RS07025 ]
  • symbol: SA1237
  • description: hypothetical protein
  • length: 207
  • theoretical pI: 10.0552
  • theoretical MW: 24502.3
  • GRAVY: -0.324638

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Other reactive intermediate/imine deaminase (TIGR00004; HMM-score: 16.2)
    and 3 more
    isopropylmalate/isohomocitrate dehydrogenases (TIGR02088; HMM-score: 12.5)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 12.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 12.2)
  • TheSEED  :
    • 5-bromo-4-chloroindolyl phosphate hydrolysis protein
  • PFAM:
    no clan defined Halogen_Hydrol; 5-bromo-4-chloroindolyl phosphate hydrolysis protein (PF10112; HMM-score: 208.6)
    and 4 more
    JIP_LZII; JNK-interacting protein leucine zipper II (PF16471; HMM-score: 14.5)
    Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 14.4)
    YjgF-like (CL0534) Ribonuc_L-PSP; Endoribonuclease L-PSP (PF01042; HMM-score: 13.9)
    no clan defined HJURP_C; Holliday junction regulator protein family C-terminal repeat (PF12347; HMM-score: 8.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.048404
    • TAT(Tat/SPI): 0.000348
    • LIPO(Sec/SPII): 0.012135
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRYNISHIFGVLVGIPVAFLTSIFGMIALDVSFLIDMSIGIVGFLMTYLPIQKLTSRKYLNEIGLTRKDYRYIRNQLNHTHQKLRGILKTYVNIRSIKDFRQINDIYQISRSIYTTVRQRPASFYKVEGFFYSHIDNALNLVDAYTRLAKMPKKSINEQQKLEQTRITLDEVKRTLIADLKRLNEDDYERLDIEMELNKLHQKHHQD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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