PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA1320 [new locus tag: SA_RS07490 ]
• pan locus tag^?: SAUPAN003962000
• symbol: SA1320
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1320 [new locus tag: SA_RS07490 ]
• symbol: SA1320
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1527514..1529676
• length: 2163
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1124160 NCBI
• RefSeq: NP_374603 NCBI
• BioCyc: see SA_RS07490
• MicrobesOnline: 103629 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  481
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  1981
  2041
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  2161
  
  ATGAATAAAATTAATGATAGAGACTTAACAGAATTGAGTAGTTACTGGGTTTATCAAGAC
  ATCAATAAAGATAATGATTTTACAGTTAACGGAAAAAGATTTAAGCAGGTTGATGAATAT
  AATGATAATGGAAATAAAAATAAAAAAGGTGCCTCAGATTTAAAAATTTATGAATTGTTG
  GATGAAAAAGGAAAACCAACTGGTGAACAAACCATGATTTATCAAGGAACATCTAATGAG
  GCAATAAACCCTAATAATCCATTAAAATCTTTAGATATCGGAGATGATTGGTTACAAAAT
  GCGAAATTAATGGATAATAGTAATAAGTCAACGGATTATCTTAAGCAATCAGACGAATTT
  GCAGATTTATATAGAGACAAACTAAATGACGCTAATAAATTAAGTAAGTATAACTTTACA
  CAAAAATATGGTGTTAGTCCAAATAATTACAAAAACAAAACCATTGTGGCGGATGGCGGT
  AATTCGGAAGGCGGTGCAGGAGCAAAATATCAAGGAGCGAAACATCCAAATGAAAAAGTT
  GTTGCTACTGACCCAGCAATGGTACCTTATGCTGCTTGGCAGAAATTTGCTAGACCACGC
  TTTGATAATATGATTAGTTTTAATAGTACCAACGATTTATTAACATGGTTACAAGATCCA
  TTCATCAAAGATATGCCAGGAAAACGCGTTAACATTAGTGATGGTGTGCCCAGGTTAGAT
  GCTTTAATAGACAGCCATGTAGGTTATAAAAGGAAGTTAAATAGAAAAGACAACACATAC
  GATACTGTACCACTAATCAAAATTAAGTCGGTAAAAGATACAGAAATTAAAAATGGAAAA
  AAAGTAAAAAAGACTATTAACATAACATTAGATATGGATGGGCGAATTCCGATAAATGTT
  TGGACAGGGGATTCGATTGCACGTTCTGGAAGAGGAACTTTAATTAAACTTAATTTAGAA
  AATCTTGATGCGTTGAGTAAACTGATTACTGGTGAAACTAGTGGTATGTTAGCAGAATGC
  GTAATCTTTTTAAATGAAAGTTTTAACATCTCAGAAAATGAAAATAAAAATTTTGCAGAT
  AGAAAGCAACAATTATCAGAAGGATTTAAGGATAAGATTAACTTATTTCAATTAGAAGAA
  ATGGAAAGAACTTTAATTAGTAAAATAAACTCACTTGAAGAAGTTGCAGATGAAACAATA
  GAAAGTATTAGTGCTGTTAAACACTTATTACCTGATTTTGCATTGGATGCATTAAAAGAA
  AGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATA
  GATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCT
  GAAGAAATGATGAAACATTTGAAAGTAGTGAAACAGAATATAGAGCGAATAAAAAATCAA
  AATGATATTTATGGTAGGCAAATTGCAGAAATTAGAAGTATTATGAAACAACAAGATGCA
  ACAATTTTAGATGGGAATTTCCAAATTAATTGTAGCGGCGAAAATATGGTACAGGGTCTA
  GTTATACCTTCTAATTATTTAGGAAGAAAAATGAAAATATTAAAAGACCATATCGATGAT
  GGTATTAAAAAAATAGCAGACTATGTTCAAAGTATATATGATGAATATGCATCGAAAATT
  GTTGATGTAATAAAATATTTGATTAATACAATTCCCAAAATACGTAAGAATTTAAGACAT
  GCAATTGAAATGTTAAATGTAAAAAAGAAAGAATTTTTGTCCCTGATTCCTAATGTAACT
  TGTAATTATATTAAAACTAAATTAGAAGAATTAGATAATACTTTAGGCAAATGGGAGCCA
  TTTCTTAATGATTTAAAAGCAGTGTCACCAATTTTAGATAACCATTTAGATGATATTGTT
  AAGAACATGAAGCCTTTGATTGTACAGATGTTATTTGAACCATCACATTATGATGATATG
  TTTATTTTAAACACACAAGCTCATGCACGTCTTGATCAAATGGCACAACAGTTTGAAGTT
  GTTTGTAATGGCTTGAACGAAAATGAAGGACAAGCAATTCAAACGATGGATCAATCTGCC
  TCTCTAATACGGTCAAACTTAATTCAAGTTAAAGAACAATTAGAAAAACTAGCTGTATAC
  TAA
  60
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  2160
  2163
  

⊟Protein

⊟General

• locus tag: SA1320 [new locus tag: SA_RS07490 ]
• symbol: SA1320
• description: hypothetical protein
• length: 720
• theoretical pI: 5.94666
• theoretical MW: 82293.1
• GRAVY: -0.582639

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Detoxification formyl-CoA transferase (TIGR03253; EC 2.8.3.16; HMM-score: 14.2)
  and 1 more
  Cellular processes Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 8.3)
• TheSEED  :
  • Phage protein
• PFAM:
  no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 24.1)
  Apolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 22.4)
  and 3 more
  Carbpep_Y_N; Carboxypeptidase Y pro-peptide (PF05388; HMM-score: 17.9)
  P-loop_NTPase (CL0023) Guanylate_kin; Guanylate kinase (PF00625; HMM-score: 13.6)
  no clan defined TerB_C; TerB-C domain (PF15615; HMM-score: 10.6)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.019618
  • TAT(Tat/SPI): 0.001516
  • LIPO(Sec/SPII): 0.005105
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927070 NCBI
• RefSeq: NP_374603 NCBI
• UniProt: A0A0H3JU80 UniProt

⊟Protein sequence

• MNKINDRDLTELSSYWVYQDINKDNDFTVNGKRFKQVDEYNDNGNKNKKGASDLKIYELLDEKGKPTGEQTMIYQGTSNEAINPNNPLKSLDIGDDWLQNAKLMDNSNKSTDYLKQSDEFADLYRDKLNDANKLSKYNFTQKYGVSPNNYKNKTIVADGGNSEGGAGAKYQGAKHPNEKVVATDPAMVPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNISDGVPRLDALIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINVWTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFADRKQQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKERINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIERIKNQNDIYGRQIAEIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDDGIKKIADYVQSIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVTCNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMLFEPSHYDDMFILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY

⊟Experimental data

• experimentally validated: data available for COL
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SA1320 < SA1321

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications