PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003962000
• symbol^?: —
• synonym:
• description^?: pseudogene
• strand^?: -
• coordinates^?: 4273917..4278551
• synteny block^?: BlockID0030080
• occurrence^?: in 67% of 33 strains

⊟Orthologs

COL:
SACOL1532
N315:
SA1320
NCTC8325:
SAOUHSC_01583
Newman:
NWMN_1397
USA300_FPR3757:
SAUSA300_1439
04-02981:
SA2981_1446
08BA02176:
C248_1529
11819-97:
—
6850:
RSAU_001357
71193:
ST398NM01_1555
ECT-R 2:
—
ED133:
—
ED98:
SAAV_1479
HO 5096 0412:
—
JH1:
SaurJH1_1577
JH9:
SaurJH9_1546
JKD6008:
SAA6008_01459
JKD6159:
—
LGA251:
—
M013:
M013TW_1503
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1429
Mu3:
SAHV_1477
Mu50:
SAV1489
MW2:
MW1443
RF122:
—
ST398:
—
T0131:
SAT0131_01582
TCH60:
—
TW20:
SATW20_14870
USA300_TCH1516:
USA300HOU_1491
VC40:
SAVC_06695

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKINDRDLTELSSYWVYQNIDIKKEFKVNGKRFKQVDSYNDDKNSNLNGAADIKIYELL
  N315            MNKINDRDLTELSSYWVYQDINKDNDFTVNGKRFKQVDEYNDNGNKNKKGASDLKIYELL
  NCTC8325        MNKINDRDLTELSSYWVYQNIDIKKEFKVNGKRFKQVDSYNDDKNSNLNGAADIKIYELL
  Newman          MNKINDRDLTELSSYWVYQNIDIKKEFKVNGKRFKQVDSYNDDKNSNLNGAADIKIYELL
                  *******************:*: .::*.**********.***: *.* :**:*:******
  
  COL             DDKSKPTGQQTIIYQGTSNEAINPNNPLKSSGFGDDWLQNAKLMNNDNESTDYLKQTDQL
  N315            DEKGKPTGEQTMIYQGTSNEAINPNNPLKSLDIGDDWLQNAKLMDNSNKSTDYLKQSDEF
  NCTC8325        DDKSKPTGQQTIIYQGTSNEAINPNNPLKSSGFGDDWLQNAKLMNNDNESTDYLKQTDQL
  Newman          DDKSKPTGQQTIIYQGTSNEAINPNNPLKSSGFGDDWLQNAKLMNNDNESTDYLKQTDQL
                  *:*.****:**:****************** .:***********:*.*:*******:*::
  
  COL             SNQYKIKLEDADRLSNSDFLKKYRMESSNFKNKTIVADGGNSEGGAGAKYQGAKHPNEKV
  N315            ADLYRDKLNDANKLSKYNFTQKYGVSPNNYKNKTIVADGGNSEGGAGAKYQGAKHPNEKV
  NCTC8325        SNQYKIKLEDADRLSNSDFLKKYRMESSNFKNKTIVADGGNSEGGAGAKYQGAKHPNEKV
  Newman          SNQYKIKLEDADRLSNSDFLKKYRMESSNFKNKTIVADGGNSEGGAGAKYQGAKHPNEKV
                  :: *: **:**::**: :* :** :...*:******************************
  
  COL             VATDSAMIPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNINDGVPRLD
  N315            VATDPAMVPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNISDGVPRLD
  NCTC8325        VATDSAMIPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNINDGVPRLD
  Newman          VATDSAMIPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNINDGVPRLD
                  ****.**:********************************************.*******
  
  COL             TLIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINV
  N315            ALIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINV
  NCTC8325        TLIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINV
  Newman          TLIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINV
                  :***********************************************************
  
  COL             WTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFAD
  N315            WTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFAD
  NCTC8325        WTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFAD
  Newman          WTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFAD
                  ************************************************************
  
  COL             RKKQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKE
  N315            RKQQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKE
  NCTC8325        RKKQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKE
  Newman          RKKQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKE
                  **:*********************************************************
  
  COL             RINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIDQIKNQ
  N315            RINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIERIKNQ
  NCTC8325        RINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIDQIKNQ
  Newman          RINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIDQIKNQ
                  ******************************************************::****
  
  COL             NDIYGRQIADIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDD
  N315            NDIYGRQIAEIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDD
  NCTC8325        NDIYGRQIADIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDD
  Newman          NDIYGRQIADIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDD
                  *********:**************************************************
  
  COL             GIKKIADYVQGIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVT
  N315            GIKKIADYVQSIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVT
  NCTC8325        GIKKIADYVQGIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVT
  Newman          GIKKIADYVQGIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVT
                  **********.*************************************************
  
  COL             CNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDM
  N315            CNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMLFEPSHYDDM
  NCTC8325        CNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDM
  Newman          CNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDM
                  **************************************************:*********
  
  COL             FILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY
  N315            FILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY
  NCTC8325        F--------------------------NSRKALTPVFSS-------------------VL
  Newman          FILNTQAHARLDQMAQQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY
                  *                          *. :*: .: .*                   *