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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_01583
- pan locus tag?: SAUPAN003962000
- symbol: SAOUHSC_01583
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_01583
- symbol: SAOUHSC_01583
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1508540..1510567
- length: 2028
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3919999 NCBI
- RefSeq: YP_500098 NCBI
- BioCyc: G1I0R-1471 BioCyc
- MicrobesOnline: 1290012 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1981ATGAATAAAATTAATGATAGGGATTTAACAGAATTAAGTAGTTACTGGGTTTATCAAAAT
ATTGATATAAAAAAAGAATTTAAAGTTAATGGAAAAAGGTTTAAACAAGTAGACAGTTAT
AATGATGATAAGAATAGTAATTTGAATGGTGCTGCTGATATTAAAATATATGAGTTATTA
GATGATAAAAGTAAACCAACTGGTCAACAGACAATAATTTATCAAGGAACATCTAATGAG
GCAATTAATCCAAATAATCCATTAAAATCATCGGGGTTTGGAGATGATTGGCTCCAAAAT
GCTAAATTAATGAATAATGATAATGAAAGCACAGATTATTTAAAGCAAACAGATCAATTA
TCAAATCAATATAAAATAAAGTTAGAAGATGCAGATAGATTATCAAATAGTGATTTTTTA
AAAAAATATAGAATGGAATCAAGTAACTTCAAAAACAAAACCATTGTGGCGGATGGCGGT
AATTCGGAAGGCGGTGCAGGAGCAAAATATCAAGGAGCGAAACATCCGAATGAAAAAGTT
GTTGCTACTGACTCAGCAATGATTCCTTATGCTGCTTGGCAGAAATTTGCTAGACCACGC
TTTGATAATATGATTAGTTTTAATAGTACCAACGATTTATTAACATGGTTACAAGATCCA
TTCATCAAAGATATGCCAGGAAAACGCGTTAACATTAATGATGGTGTGCCCAGGTTAGAT
ACTTTAATAGACAGCCATGTAGGTTATAAAAGGAAGTTAAATAGAAAAGATAACACATAC
GATACTGTACCACTAATCAAAATAAAGTCGGTAAAAGATACAGAAATTAAAAATGGAAAA
AAAGTAAAAAAGACTATTAACATAACATTAGATATGGATGGGCGAATTCCAATAAATGTT
TGGACAGGAGATTCGATTGCACGTTCTGGAAGAGGAACTTTAATTAAACTTAATTTAGAA
AATCTTGATGCGTTGAGTAAACTGATTACTGGTGAAACAAGTGGTATGTTAGCAGAATGC
GTAATCTTTTTAAATGAAAGTTTTAACATCTCAGAAAATGAAAATAAAAATTTTGCAGAT
AGAAAGAAACAATTATCAGAAGGATTTAAGGATAAGATTAACTTATTTCAGTTAGAAGAA
ATGGAAAGAACTTTAATTAGTAAAATAAACTCACTTGAAGAAGTTGCAGATGAAACAATA
GAAAGTATTAGTGCTGTTAAACACTTATTACCTGATTTTGCATTGGATGCATTAAAAGAA
AGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATA
GATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCT
GAAGAAATGATGAAACATTTGAAAGTAGTGAAACAGAATATAGACCAAATAAAAAATCAA
AATGATATTTATGGTAGGCAAATTGCAGATATTAGAAGTATTATGAAACAACAAGATGCA
ACAATTTTAGATGGAAATTTTCAAATTAATTGTAGCGGCGAAAATATGGTACAGGGTCTA
GTTATACCTTCTAATTATTTAGGAAGAAAAATGAAAATATTAAAAGACCATATCGATGAT
GGTATTAAAAAAATAGCAGACTATGTTCAAGGTATATATGATGAATATGCATCGAAAATT
GTCGATGTAATAAAATATTTGATTAATACAATTCCCAAAATACGTAAGAATTTAAGACAT
GCAATTGAAATGTTAAATGTAAAAAAGAAAGAATTTTTGTCCCTGATTCCTAATGTAACT
TGTAATTATATTAAAACTAAATTAGAAGAATTAGATAATACTTTAGGCAAATGGGAGCCT
TTTCTTAATGATTTAAAAGCAGTGTCACCAATTTTAGATAACCATTTAGATGATATTGTT
AAGAACATGAAGCCTTTGATTGTACAAATGATATTTGAACCATCACATTATGACGATATG
TTTAATTCAAGAAAAGCTTTAACGCCAGTGTTCTCAAGCGTTTTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_01583
- symbol: SAOUHSC_01583
- description: hypothetical protein
- length: 675
- theoretical pI: 6.81306
- theoretical MW: 77180.5
- GRAVY: -0.56637
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Detoxification formyl-CoA transferase (TIGR03253; EC 2.8.3.16; HMM-score: 16.5)and 1 moreCellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 11.7)
- TheSEED :
- hypothetical protein within a prophage
- PFAM: no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 25.5)and 3 moreApolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 19.6)Carbpep_Y_N; Carboxypeptidase Y pro-peptide (PF05388; HMM-score: 16.8)DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 8.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.019107
- TAT(Tat/SPI): 0.001276
- LIPO(Sec/SPII): 0.003102
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKINDRDLTELSSYWVYQNIDIKKEFKVNGKRFKQVDSYNDDKNSNLNGAADIKIYELLDDKSKPTGQQTIIYQGTSNEAINPNNPLKSSGFGDDWLQNAKLMNNDNESTDYLKQTDQLSNQYKIKLEDADRLSNSDFLKKYRMESSNFKNKTIVADGGNSEGGAGAKYQGAKHPNEKVVATDSAMIPYAAWQKFARPRFDNMISFNSTNDLLTWLQDPFIKDMPGKRVNINDGVPRLDTLIDSHVGYKRKLNRKDNTYDTVPLIKIKSVKDTEIKNGKKVKKTINITLDMDGRIPINVWTGDSIARSGRGTLIKLNLENLDALSKLITGETSGMLAECVIFLNESFNISENENKNFADRKKQLSEGFKDKINLFQLEEMERTLISKINSLEEVADETIESISAVKHLLPDFALDALKERINELFKGIKSFIEKVYDSIDNEILEIFKNIDHDFRDGVSEEMMKHLKVVKQNIDQIKNQNDIYGRQIADIRSIMKQQDATILDGNFQINCSGENMVQGLVIPSNYLGRKMKILKDHIDDGIKKIADYVQGIYDEYASKIVDVIKYLINTIPKIRKNLRHAIEMLNVKKKEFLSLIPNVTCNYIKTKLEELDNTLGKWEPFLNDLKAVSPILDNHLDDIVKNMKPLIVQMIFEPSHYDDMFNSRKALTPVFSSVL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- predicted SigA promoter [1] : S636 < SAOUHSC_01583 < SAOUHSC_01584 < S637
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1] Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)