From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1711 [new locus tag: SA_RS09825 ]
  • pan locus tag?: SAUPAN004919000
  • symbol: SA1711
  • pan gene symbol?: dinB
  • synonym: dinP
  • product: DNA polymerase IV

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1711 [new locus tag: SA_RS09825 ]
  • symbol: SA1711
  • product: DNA polymerase IV
  • replicon: chromosome
  • strand: -
  • coordinates: 1956914..1957984
  • length: 1071
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    TTGACTGAGAGACGAATTATTCATATAGATATGGACTATTTTTTTGCACAAGTCGAAATG
    AGAGATAACCCCAAATTGAAAGGGAAACCAGTCATTGTTGGTGGTAAAGCAAGCAGTAGG
    GGTGTTGTCTCTACGGCATCCTATGAAGCACGAAAATACGGCGTCCATTCAGCAATGCCT
    ATGTCACAAGCGCATAAATTATGTCCAAATGGATACTTTGTCACAAGTAATTTTGGTGCT
    TACCGAGAAACATCTGCGCAGATTATGTCTATTTTCCGAAGTTATACAGATAAGGTAGAA
    CCGATGTCATTGGATGAAGCGTATTTAGATATTACAGAATTAGTGAGACCAGACCTTCCT
    GCTTCGAAAATTGCTCAGTATATTAGAAAAGATATTCTAGAGCAGACACATTTAACAGCA
    TCTGCAGGTGTTTCTTATAACAAATTTTTAGCTAAATTAGCGAGTGGTATGAATAAACCT
    GATGGTTTGACTGTGATTGATTATCAAAATGTCCATGATATTTTGATGACATTGGATATT
    GGAGATTTTCCAGGCGTAGGTAAAGCTTCCAAAAAAGTAATGCATGATAATGGTATTTTT
    AACGGTAGAGATTTATATGAGAAAACGGAATTTGAATTAATACGTTTGTTTGGAAAAAGA
    GGTCGGGGTTTATATAACAAGGCACGCGGTATTGACCATAGTGAAGTGAAATCATCAAGA
    GTAAGAAAATCAGTAGGGACTGAACGCACATTTGCAACAGACGTGAATGATGATGAAGAG
    ATTTTAAGAAAAGTATGGGAATTGTCAGGTAAAACAGCTGAACGTCTAAATAAATTACAG
    AAGTCAGCTAAAACTGTAACGGTTAAAATTAAAACTTATCAATTTGAAACGCTATCTAAA
    CAGATGAGTTTAAGAGATTCGGTTAGTTCTGAAGAAGATATTTATAATATTGCATATTTA
    CTTTATAACGATTTAAAAGACCCAGATGTACCAATTCGACTTATTGGTGTCACTGTAGGT
    AATTTAGAACAATCAACTTATAAAAATATGACGATATATGACTTTATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1071

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1711 [new locus tag: SA_RS09825 ]
  • symbol: SA1711
  • description: DNA polymerase IV
  • length: 356
  • theoretical pI: 9.28925
  • theoretical MW: 40296.8
  • GRAVY: -0.42809

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.7?  ExPASy
    DNA-directed DNA polymerase Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
  • TIGRFAM:
  • TheSEED  :
    • DNA polymerase IV (EC 2.7.7.7)
    DNA Metabolism DNA repair DNA repair, bacterial  DNA polymerase IV (EC 2.7.7.7)
  • PFAM:
    no clan defined IMS; impB/mucB/samB family (PF00817; HMM-score: 182.9)
    and 3 more
    IMS_C; impB/mucB/samB family C-terminal domain (PF11799; HMM-score: 75.3)
    HHH (CL0198) IMS_HHH; IMS family HHH motif (PF11798; HMM-score: 28.6)
    no clan defined DUF3219; Protein of unknown function (DUF3219) (PF11514; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mg2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.014981
    • TAT(Tat/SPI): 0.017475
    • LIPO(Sec/SPII): 0.002169
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA1711&oldid=94840"