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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004919000
- symbol?: dinB
- synonym: dinP
- description?: DNA polymerase IV
- DNA polymerase IV
- DNA polymerase IV, putative
- impB/mucB/samB family protein
- DNA-damage-inducible protein P
- DNA-directed DNA polymerase IV
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5107923..5108964
- synteny block?: BlockID0038250
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1851
08BA02176:
C248_1969
11819-97:
MS7_1930
6850:
RSAU_001782 (dinB)
71193:
ST398NM01_1988
ECT-R 2:
ECTR2_1766
ED133:
SAOV_1994
ED98:
SAAV_1961 (dinP)
HO 5096 0412:
SAEMRSA15_18020
JH1:
SaurJH1_1983
JH9:
SaurJH9_1949
JKD6008:
SAA6008_01915 (dinP)
JKD6159:
SAA6159_01826 (dinP)
LGA251:
SARLGA251_17770
M013:
M013TW_1931
MRSA252:
SAR1986
MSHR1132:
SAMSHR1132_17400
MSSA476:
SAS1817
Mu3:
SAHV_1880
Mu50:
SAV1895
MW2:
MW1836
RF122:
SAB1827c
ST398:
SAPIG1988 (dinB)
T0131:
SAT0131_02020
TCH60:
HMPREF0772_11248 (dinB)
TW20:
SATW20_18890
USA300_TCH1516:
USA300HOU_1894
VC40:
SAVC_08735
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMP
N315 MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMP
NCTC8325 ----------MDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMP
Newman MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMP
USA300_FPR3757 ----------MDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMP
**************************************************
COL MSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLP
N315 MSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLP
NCTC8325 MSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLP
Newman MSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLP
USA300_FPR3757 MSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLP
************************************************************
COL ASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDI
N315 ASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDI
NCTC8325 ASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDI
Newman ASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDI
USA300_FPR3757 ASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDI
******************************************:*****************
COL GDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSR
N315 GDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSR
NCTC8325 GDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSR
Newman GDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSR
USA300_FPR3757 GDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSR
************************************************************
COL VRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSK
N315 VRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSK
NCTC8325 VRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSK
Newman VRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSK
USA300_FPR3757 VRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSK
************************************************************
COL QMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
N315 QMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
NCTC8325 QMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
Newman QMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
USA300_FPR3757 QMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
********************************************************