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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1832 [new locus tag: SA_RS10515 ]
- pan locus tag?: SAUPAN005252000
- symbol: SA1832
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1832 [new locus tag: SA_RS10515 ]
- symbol: SA1832
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2069699..2070016
- length: 318
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1124724 NCBI
- RefSeq: NP_375133 NCBI
- BioCyc: see SA_RS10515
- MicrobesOnline: 104159 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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301ATGTTCAACATTAATATTGATGAAGATGAAGCACGTGAGTTACTTGAGCAGGCTATCAAT
GCACGTGTGGACGAATTAGCGAAAGAGAAATATTTTATGACTTACAAAGAGTTGTCTAAC
TATCTGAATTTAAGTAAGCCTACTATTGAAGAATTACTTATTAATAATGGCATGAAATAT
TATATGGTCGGATCTACGTATAGATTCAAAAAGTCTGATGTAGATGAATTCATGGAACAG
CTTACTGCTCATATGAATATCCAGAATAACGACTTTAAACAAGTCAATATCAAAAAGTTA
TTGGAGGCAAGGCAATGA60
120
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240
300
318
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1832 [new locus tag: SA_RS10515 ]
- symbol: SA1832
- description: hypothetical protein
- length: 105
- theoretical pI: 4.7476
- theoretical MW: 12523.2
- GRAVY: -0.658095
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General DNA binding domain, excisionase family (TIGR01764; HMM-score: 70.2)and 2 moreDNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase PcrA (TIGR01073; EC 3.6.4.12; HMM-score: 14.2)ParB/RepB/Spo0J family partition protein (TIGR00180; HMM-score: 12.3)
- TheSEED :
- Hypothetical SAV0787 homolog in superantigen-encoding pathogenicity islands SaPI
- PFAM: HTH (CL0123) HTH_17; Helix-turn-helix domain (PF12728; HMM-score: 41.8)and 5 moreTn916-Xis; Excisionase from transposon Tn916 (PF09035; HMM-score: 16.2)HTH_Mga; M protein trans-acting positive regulator (MGA) HTH domain (PF08280; HMM-score: 14.9)NUMOD1; NUMOD1 domain (PF07453; HMM-score: 13.9)HTH_10; HTH DNA binding domain (PF04967; HMM-score: 13.3)HTH_5; Bacterial regulatory protein, arsR family (PF01022; HMM-score: 12.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005708
- TAT(Tat/SPI): 0.000272
- LIPO(Sec/SPII): 0.001546
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELSNYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDEFMEQLTAHMNIQNNDFKQVNIKKLLEARQ
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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