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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1841 [new locus tag: SA_RS10560 ]
  • pan locus tag?: SAUPAN005271000
  • symbol: SA1841
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1841 [new locus tag: SA_RS10560 ]
  • symbol: SA1841
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2077691..2078476
  • length: 786
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAAGTCCAAATTTATCAATTACCGATTATTTTTGGAGATAGTTCTAAAAATGAAACT
    CAAATAACGCAATGGTTCGAAAAAAATATGAATGCTGAAGTAGATGTAGTCGTTTTACCT
    GAAATGTGGAATAATGGCTATGATTTAGAGCATTTAAATGAAAAAGCAGATAATAATCTA
    GGACAAAGTTTTTCATTTATTAAACATTTAGCTGAAAAATATAAAGTCGATATCGTAGCT
    GGGTCAGTTTCTAACATTAGAAACTATCAAATATTTAATACAGCTTTTAGTGTGAATAAA
    AGTGGCCAGCTGATTAATGAATACGACAAAGTTCATTTAGTTCCTATGTTAAGAGAGCAT
    GAATTTTTAACCGCTGGCGAAAACGTAGCTGAACCCTTTCAATTGTCTGACGGTACTTAT
    GTGACCCAACTTATCTGTTATGATTTACGTTTTCCAGAATTATTAAGATATCCTGCTCGT
    AGTGGTGCTAAAATTGCATTTTATGTGGCGCAATGGCCTATGTCACGTCTTCAACATTGG
    CATTCATTACTAAAGGCACGTGCAATTGAAAATAATATGTTTGTCATTGGAACTAATAGC
    ACTGGATTCGATGGTAACACAGAATATGCTGGTCATTCGATAGTTATAAACCCAAATGGA
    GATTTAGTTGGAGAATTAAATGAATCCGCAGATATTTTGACTGTAGATTTAAACTTAAAT
    GAAGTAGAACAGCAACGCGAAAATATACCTGTATTTAAAAGTATTAAATTAGATTTGTAT
    AAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    786

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1841 [new locus tag: SA_RS10560 ]
  • symbol: SA1841
  • description: hypothetical protein
  • length: 261
  • theoretical pI: 4.87589
  • theoretical MW: 29839.5
  • GRAVY: -0.300383

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Central intermediary metabolism Polyamine biosynthesis N-carbamoylputrescine amidase (TIGR03381; EC 3.5.1.53; HMM-score: 67.4)
    Genetic information processing Protein fate Protein modification and repair apolipoprotein N-acyltransferase (TIGR00546; EC 2.3.1.-; HMM-score: 57.4)
  • TheSEED  :
    • Omega-amidase YafV (EC 3.5.1.3)
    Omega-amidase KE2  Omega amidase, Nit2 homolog (EC 3.5.1.3)
  • PFAM:
    no clan defined CN_hydrolase; Carbon-nitrogen hydrolase (PF00795; HMM-score: 151.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012712
    • TAT(Tat/SPI): 0.000082
    • LIPO(Sec/SPII): 0.00126
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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