From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1911 [new locus tag: SA_RS10995 ]
  • pan locus tag?: SAUPAN005400000
  • symbol: atpB
  • pan gene symbol?: atpB
  • synonym:
  • product: ATP synthase F0F1 subunit A

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1911 [new locus tag: SA_RS10995 ]
  • symbol: atpB
  • product: ATP synthase F0F1 subunit A
  • replicon: chromosome
  • strand: -
  • coordinates: 2160973..2161701
  • length: 729
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGGATCACAAATCCCCGCTCGTGAGTTGGAATTTATTCGGTTTTGATATCGTTTTCAAT
    TTATCAAGTATATTGATGATACTTGTTACGGCGTTTCTTGTTTTTCTACTTGCTATCATT
    TGTACGCGTAATTTGAAAAAAAGACCAACTGGCAAACAAAATTTCGTTGAATGGATTTTT
    GATTTCGTGAGGGGAATCATTGAAGGTAACATGGCTTGGAAAAAAGGTGGTCAATTCCAC
    TTCTTAGCAGTAACGCTGATTCTGTACATTTTTATAGCTAATATGTTAGGTCTTCCGTTT
    TCTATAGTAACGAAAGATCACACATTGTGGTGGAAATCACCGACAGCTGATGCAACAGTG
    ACTTTAACGTTGTCTACAACGATAATACTGTTAACTCACTTTTATGGAATTAAAATGCGT
    GGTACGAAACAATATCTTAAAGGTTATGTACAGCCGTTTTGGCCATTGGCAATTATTAAT
    GTTTTTGAAGAGTTCACTTCAACATTAACGCTTGGTCTGCGTTTGTACGGTAACATATTT
    GCAGGTGAGATACTATTAACATTACTTGCTGGCTTATTCTTTAACGAACCAGCATGGGGT
    TGGATTATTAGTATCCCAGGATTAATTGTTTGGCAAGCATTTTCAATATTTGTAGGAACA
    ATCCAAGCATATATCTTTATTATGCTTTCGATGGTTTATATGTCACATAAAGTGGCAGAT
    GAACACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    729

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1911 [new locus tag: SA_RS10995 ]
  • symbol: AtpB
  • description: ATP synthase F0F1 subunit A
  • length: 242
  • theoretical pI: 9.55099
  • theoretical MW: 27629.7
  • GRAVY: 0.679339

⊟Function[edit | edit source]

  • reaction:
    EC 3.6.3.14?  ExPASy
    H+-transporting two-sector ATPase ATP + H2O + H+(In) = ADP + phosphate + H+(Out)
  • TIGRFAM:
    Metabolism Energy metabolism ATP-proton motive force interconversion ATP synthase F0, A subunit (TIGR01131; EC 3.6.3.14; HMM-score: 147.4)
    and 1 more
    alternate F1F0 ATPase, F0 subunit A (TIGR03306; EC 3.6.3.-; HMM-score: 77.1)
  • TheSEED  :
    • ATP synthase F0 sector subunit a (EC 7.1.2.2)
    Respiration ATP synthases F0F1-type ATP synthase  ATP synthase F0 sector subunit a
  • PFAM:
    no clan defined ATP-synt_A; ATP synthase A chain (PF00119; HMM-score: 189.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002082
    • TAT(Tat/SPI): 0.000436
    • LIPO(Sec/SPII): 0.017046
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRNLKKRPTGKQNFVEWIFDFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSIVTKDHTLWWKSPTADATVTLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIINVFEEFTSTLTLGLRLYGNIFAGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFVGTIQAYIFIMLSMVYMSHKVADEH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA1911&oldid=96005"