From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1956 [new locus tag: SA_RS11225 ]
  • pan locus tag?: SAUPAN005447000
  • symbol: truncated-SA
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1956 [new locus tag: SA_RS11225 ]
  • symbol: truncated-SA
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2205452..2206111
  • length: 660
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATTATTTATTATACTATGGTTAATTCAGTACAATCATCATATGCAGATAGTACACACCTG
    ATTGGTATTGCTATTACAACTCAAAGCATCATAATCATTGTTGTTTTATTGATTAAAGCA
    ATTATTACTTGGTTATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCA
    ACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAA
    AAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTT
    AAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCACTCTCTCAAAGTGTTGCA
    GAAAATATCATAAGAGTTTATACAGTAATGACAATCATTTTATTCGTTGTTATTCATGCA
    ATCATTTTAATGGGTATCGTTCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGAT
    AAAGTAAAAACAGCTGACAAGGATAAAAAAGTTGTCACTGAACCAAAAAATACAAAAGTA
    GAAAATGGTAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTA
    AATGATAATACAACAAAAACGATGACTTCAGATAAACCAGAAGACAATCAACCAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1956 [new locus tag: SA_RS11225 ]
  • symbol: Truncated-SA
  • description: hypothetical protein
  • length: 219
  • theoretical pI: 10.2226
  • theoretical MW: 24677
  • GRAVY: 0.179909

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthetic protein FlhB (TIGR00328; HMM-score: 11.4)
  • TheSEED  :
    • Lytic regulatory protein
  • PFAM:
    no clan defined DUF975; Protein of unknown function (DUF975) (PF06161; HMM-score: 17.5)
    DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 15.8)
    MLANA; Protein melan-A (PF14991; HMM-score: 14.8)
    and 7 more
    Mucin; Mucin-like glycoprotein (PF01456; HMM-score: 13.6)
    Bac_export_2; FlhB HrpN YscU SpaS Family (PF01312; HMM-score: 13.1)
    DUF2681; Protein of unknown function (DUF2681) (PF10883; HMM-score: 11.7)
    NDUF_B6; NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit (PF09782; HMM-score: 10.9)
    Tmemb_9; TMEM9 (PF05434; HMM-score: 10.4)
    TPR (CL0020) HemY_N; HemY protein N-terminus (PF07219; HMM-score: 10)
    no clan defined DUF2663; Protein of unknown function (DUF2663) (PF10864; HMM-score: 6.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 0
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002003
    • TAT(Tat/SPI): 0.000129
    • LIPO(Sec/SPII): 0.00074
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIYYTMVNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA1956&oldid=94922"