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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1956 [new locus tag: SA_RS11225 ]
- pan locus tag?: SAUPAN005447000
- symbol: truncated-SA
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1956 [new locus tag: SA_RS11225 ]
- symbol: truncated-SA
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2205452..2206111
- length: 660
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1124857 NCBI
- RefSeq: NP_375261 NCBI
- BioCyc: see SA_RS11225
- MicrobesOnline: 104287 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATTATTTATTATACTATGGTTAATTCAGTACAATCATCATATGCAGATAGTACACACCTG
ATTGGTATTGCTATTACAACTCAAAGCATCATAATCATTGTTGTTTTATTGATTAAAGCA
ATTATTACTTGGTTATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCA
ACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAA
AAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTT
AAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCACTCTCTCAAAGTGTTGCA
GAAAATATCATAAGAGTTTATACAGTAATGACAATCATTTTATTCGTTGTTATTCATGCA
ATCATTTTAATGGGTATCGTTCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGAT
AAAGTAAAAACAGCTGACAAGGATAAAAAAGTTGTCACTGAACCAAAAAATACAAAAGTA
GAAAATGGTAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTA
AATGATAATACAACAAAAACGATGACTTCAGATAAACCAGAAGACAATCAACCAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1956 [new locus tag: SA_RS11225 ]
- symbol: Truncated-SA
- description: hypothetical protein
- length: 219
- theoretical pI: 10.2226
- theoretical MW: 24677
- GRAVY: 0.179909
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Chemotaxis and motility flagellar biosynthetic protein FlhB (TIGR00328; HMM-score: 11.4)
- TheSEED :
- Lytic regulatory protein
- PFAM: no clan defined DUF975; Protein of unknown function (DUF975) (PF06161; HMM-score: 16.9)DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 16.4)DUF2681; Protein of unknown function (DUF2681) (PF10883; HMM-score: 16.3)UPF0242; Uncharacterised protein family (UPF0242) N-terminus (PF06785; HMM-score: 14.5)MLANA; Protein melan-A (PF14991; HMM-score: 14.5)and 5 moreBac_export_2; FlhB HrpN YscU SpaS Family (PF01312; HMM-score: 13.4)NDUF_B6; NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit (PF09782; HMM-score: 12.7)Tmemb_9; TMEM9 (PF05434; HMM-score: 12.1)CRIM1_C; Cysteine-rich motor neuron 1 protein C-terminal (PF19442; HMM-score: 9.7)DUF7314; Domain of unknown function (DUF7314) (PF23996; HMM-score: 8.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9685
- Cell wall & surface Score: 0
- Extracellular Score: 0.0314
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 0
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002003
- TAT(Tat/SPI): 0.000129
- LIPO(Sec/SPII): 0.00074
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIYYTMVNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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