NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA1956 [new locus tag: SA_RS11225 ]
• pan locus tag^?: SAUPAN005447000
• symbol: truncated-SA
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SA1956 [new locus tag: SA_RS11225 ]
• symbol: truncated-SA
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 2205452..2206111
• length: 660
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1124857 NCBI
• RefSeq: NP_375261 NCBI
• BioCyc:
• MicrobesOnline: 104287 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  ATTATTTATTATACTATGGTTAATTCAGTACAATCATCATATGCAGATAGTACACACCTG
  ATTGGTATTGCTATTACAACTCAAAGCATCATAATCATTGTTGTTTTATTGATTAAAGCA
  ATTATTACTTGGTTATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCA
  ACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAA
  AAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTT
  AAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCACTCTCTCAAAGTGTTGCA
  GAAAATATCATAAGAGTTTATACAGTAATGACAATCATTTTATTCGTTGTTATTCATGCA
  ATCATTTTAATGGGTATCGTTCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGAT
  AAAGTAAAAACAGCTGACAAGGATAAAAAAGTTGTCACTGAACCAAAAAATACAAAAGTA
  GAAAATGGTAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTA
  AATGATAATACAACAAAAACGATGACTTCAGATAAACCAGAAGACAATCAACCAAAATAA
  60
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⊟Protein

⊟General

• locus tag: SA1956 [new locus tag: SA_RS11225 ]
• symbol: Truncated-SA
• description: hypothetical protein
• length: 219
• theoretical pI: 10.2226
• theoretical MW: 24677
• GRAVY: 0.179909

⊟Function

• TIGRFAM:
  Cellular processesCellular processesChemotaxis and motilityflagellar biosynthetic protein FlhB (TIGR00328; HMM-score: 11.4)
• TheSEED:  
  Lytic regulatory protein
• PFAM:
  no clan definedDUF975; Protein of unknown function (DUF975) (PF06161; HMM-score: 17.5)
  DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 15.8)
  MLANA; Protein melan-A (PF14991; HMM-score: 14.8)
  and 7 more
  Mucin; Mucin-like glycoprotein (PF01456; HMM-score: 13.6)
  Bac_export_2; FlhB HrpN YscU SpaS Family (PF01312; HMM-score: 13.1)
  DUF2681; Protein of unknown function (DUF2681) (PF10883; HMM-score: 11.7)
  NDUF_B6; NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit (PF09782; HMM-score: 10.9)
  Tmemb_9; TMEM9 (PF05434; HMM-score: 10.4)
  TPR (CL0020) HemY_N; HemY protein N-terminus (PF07219; HMM-score: 10)
  no clan definedDUF2663; Protein of unknown function (DUF2663) (PF10864; HMM-score: 6.5)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 3
• LocateP: Multi-transmembrane
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 0
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002003
  • TAT(Tat/SPI): 0.000129
  • LIPO(Sec/SPII): 0.00074
• predicted transmembrane helices (TMHMM): 3

⊟Accession numbers

• GI: 15927728 NCBI
• RefSeq: NP_375261 NCBI
• UniProt: A0A0H3JR83 UniProt

⊟Protein sequence

• MIYYTMVNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• truncated-SA no polycistronic organisation predicted

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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