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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005447000
- symbol?: —
- synonym:
- description?: lytic regulatory protein
- lytic regulatory protein
- lytic regulatory protein, putative
- lytic regulatory protein truncated with Tn554
- membrane-embedded lytic regulatory protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5602956..5610760
- synteny block?: BlockID0042420
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2087
08BA02176:
C248_2164
11819-97:
MS7_2165
6850:
RSAU_001984
71193:
ST398NM01_2189
ECT-R 2:
ECTR2_2003
ED133:
SAOV_2186
ED98:
SAAV_2203
HO 5096 0412:
SAEMRSA15_20550
JH1:
SaurJH1_2221
JH9:
SaurJH9_2183
JKD6008:
SAA6008_02186
JKD6159:
SAA6159_02061
LGA251:
SARLGA251_19480
M013:
M013TW_2107
MRSA252:
SAR2235
MSHR1132:
SAMSHR1132_19700
MSSA476:
SAS2050
Mu3:
SAHV_2131
Mu50:
SAV2147
MW2:
MW2071
RF122:
SAB2031
ST398:
SAPIG2189
T0131:
SAT0131_02312
TCH60:
HMPREF0772_11043
TW20:
SATW20_22850
USA300_TCH1516:
USA300HOU_2137
VC40:
SAVC_09615
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MIYY--------------------------------------------------------
NCTC8325 MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPV
Newman MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPV
USA300_FPR3757 MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPV
*: *
N315 ------------------------------------------------------------
NCTC8325 DAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVL
Newman DAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVL
USA300_FPR3757 DAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVL
N315 ----------------------------TMVNSVQSSYADSTHLIGIAITTQSIIIIVVL
NCTC8325 IGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVL
Newman IGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVL
USA300_FPR3757 IGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVL
::*****************************
N315 LIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLI
NCTC8325 LIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLI
Newman LIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLI
USA300_FPR3757 LIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLI
************************************************************
N315 IILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQK
NCTC8325 IILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQK
Newman IILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQK
USA300_FPR3757 IILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQK
************************************************************
N315 ITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDN
NCTC8325 ITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDN
Newman ITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDN
USA300_FPR3757 ITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDN
***********:**************.*********************************
N315 QPK
NCTC8325 QPK
Newman QPK
USA300_FPR3757 QPK
***