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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2238 [new locus tag: SA_RS12860 ]
- pan locus tag?: SAUPAN006004000
- symbol: SA2238
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2238 [new locus tag: SA_RS12860 ]
- symbol: SA2238
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2513662..2514261
- length: 600
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1125165 NCBI
- RefSeq: NP_375561 NCBI
- BioCyc: see SA_RS12860
- MicrobesOnline: 104587 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGAGTGAGAAACAATCAAATGAACAAGTTGAAGCATTTTTAAATAAAGAGAGTCAATGG
CAAGAAGAATATAAATATTTGAGAGCGTTAATCTTTAATGAAACAGAATTAGAGGAAGCG
TATAAATGGATGCATCCTTGTTACACGTTGAATAATAAAAATGTAGTACTTATCCATGGC
TTCAAAAATTATGTTGCACTATTATTTCATAAAGGTGCCATTTTGGAGGATAAATATCAT
ACACTCATTCAACAGACTGAAAAGGTGCAAGCAGCTCGTCAGTTACGATTTGAAAATTTA
ACAGAGATTCAAGCACGTACCGAAGAAATTAAATATTATCTAGCCGAAGCAATTAAAGCT
GAAAAAGCTGGTAAAAAAGTTGAAATGAAGAAAACAGAGGAATATGTTATTCCTAAAGAG
TTAGAAGCTAAGTTCGAAGAAATGCCACAGTTAGAGTCTTCATTTTATAAATTAACGCCA
GGCAGACAACATCAATATATATATCATATTGGACAAGCTAAACGCAGTGAAACAAAACAA
AAGCGTGTTGAAAAGTATATTAACCAAATACTAGAAGGTAAAGGGATGCATGATAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2238 [new locus tag: SA_RS12860 ]
- symbol: SA2238
- description: hypothetical protein
- length: 199
- theoretical pI: 8.35426
- theoretical MW: 23772
- GRAVY: -0.873869
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Detoxification copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 10.3)Transport and binding proteins Cations and iron carrying compounds copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 10.3)
- TheSEED :
- DUF1801 domain-containing protein
- PFAM: no clan defined OmdA; Bacteriocin-protection, YdeI or OmpD-Associated (PF13376; HMM-score: 63.3)DUF1801; Domain of unknown function (DU1801) (PF08818; HMM-score: 58.5)and 3 moreP-loop_NTPase (CL0023) KTI12; Chromatin associated protein KTI12 (PF08433; HMM-score: 15.4)no clan defined YdfZ; YdfZ protein (PF14001; HMM-score: 12.8)DUF3891; Protein of unknown function (DUF3891) (PF13030; HMM-score: 12.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004003
- TAT(Tat/SPI): 0.000305
- LIPO(Sec/SPII): 0.001191
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHGFKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKAEKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETKQKRVEKYINQILEGKGMHDK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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