From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2394 [new locus tag: SAUSA300_RS13260 ]
  • pan locus tag?: SAUPAN006004000
  • symbol: SAUSA300_2394
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2394 [new locus tag: SAUSA300_RS13260 ]
  • symbol: SAUSA300_2394
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2577799..2578398
  • length: 600
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAGTGAGAAACAATCAAATGAACAAGTTGAAGCATTTTTAAATAAAGAGAGTCAATGG
    CAAGAAGAATATAAATATTTGAGAGCGTTAATCTTTAATGAAACAGAATTAGAGGAAGCG
    TATAAATGGATGCATCCTTGTTACACGTTGAATAATAAAAATGTAGTACTTATCCATGGC
    TTCAAAAATTATGTTGCACTATTATTTCATAAAGGTGCCATTTTGGAGGATAAATATCAT
    ACACTCATTCAACAGACTGAAAAGGTGCAAGCAGCTCGTCAGTTACGATTTGAAAATTTA
    ACAGAGATTCAAGCACGTACCGAAGAAATTAAATATTATCTAGCCGAAGCAATTAAAGCT
    GAAAAAGCTGGTAAAAAAGTTGAAATGAAGAAAACAGAGGAATATGTTATTCCTAAAGAG
    TTAGAAGCTAAGTTCGAAGAAATGCCACAGTTAGAGTCTTCATTTTATAAATTAACGCCA
    GGCAGACAACATCAATATATATATCATATTGGACAAGCTAAACGCAGTGAAACAAGACAA
    AAGCGTGTTGAAAAGTATATTAACCAAATACTAGAAGGTAAAGGGATGCATGATAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_2394 [new locus tag: SAUSA300_RS13260 ]
  • symbol: SAUSA300_2394
  • description: hypothetical protein
  • length: 199
  • theoretical pI: 8.35599
  • theoretical MW: 23800
  • GRAVY: -0.876884

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • DUF1801 domain-containing protein
    Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles CPO analysis  DUF1801 domain-containing protein
  • PFAM:
    no clan defined OmdA; Bacteriocin-protection, YdeI or OmpD-Associated (PF13376; HMM-score: 65.5)
    DUF1801; Domain of unknown function (DU1801) (PF08818; HMM-score: 58.6)
    and 3 more
    P-loop_NTPase (CL0023) KTI12; Chromatin associated protein KTI12 (PF08433; HMM-score: 15.8)
    no clan defined YdfZ; YdfZ protein (PF14001; HMM-score: 12.8)
    DUF3891; Protein of unknown function (DUF3891) (PF13030; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004003
    • TAT(Tat/SPI): 0.000305
    • LIPO(Sec/SPII): 0.001191
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHGFKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARTEEIKYYLAEAIKAEKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQKRVEKYINQILEGKGMHDK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_2394&oldid=84387"