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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2380 [new locus tag: SA_RS13630 ]
- pan locus tag?: SAUPAN006278000
- symbol: SA2380
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2380 [new locus tag: SA_RS13630 ]
- symbol: SA2380
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2668089..2669771
- length: 1683
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1125309 NCBI
- RefSeq: NP_375706 NCBI
- BioCyc: see SA_RS13630
- MicrobesOnline: 104732 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1681ATGAACCAACATTTACTAGGAAATCCAAAATTAACTGTAACTCATGTCAATGAAGTGAAA
ACCGGTATTAACCACATCGTTGTCGACAGTGTTCAATATGGAAATCAAGAAATGATTATG
GAAAAAGATGTCACTGTGGAAATGCGCGATGGCGAAAAATTATATATTAATATTTTCAGA
CCAAATAAAGATGGCAAATTCCCTGTAGTTATGTCTGCAGATACTTACGGTAAAGATAAT
AAGCCTAAAATCACCAATATGGGTGCCCTTTGGCCAACATTAGGCGCCATTCCGACATCT
AGTTTTACACCTGAAGAATCACCAGACCCAGGATTTTGGGTACCAAACGATTATGTTGTA
GTTAAAGTTGCATTACGCGGTAGTGACAAATCCAAAGGCGTCTTATCTCCATGGTCAAAA
AGAGAAGCGGAAGATTATTACGAAGTGATTGAATGGGCAGCAAAACAGCCATGGAGTAAT
GGAAATATCGGAACAAATGGTGTTTCTTATCTTGCGGTGACTCAATGGTGGGTCGCATCA
TTAAATCCACCACATTTAAAAGCAATGATTCCTTGGGAAGGATTAAATGATATGTATAGA
GAAGTAGCCTTTCACGGGGGTATTCCTGATACTGGCTTTTATCGTTTCTGGATACAAGGT
ATTTTTGCGAGATGGACAGATAATCCAAATATCGAAGACATGATTCAAGCACAACAAGAA
CACCCTTTGTTCGATGATTTTTGGAAACAGCGTCAAGTGCCATTATCACAAATTAAAACA
CCTCTACTAACATGTGCTAGTTGGTCTACACAAGGTTTGCACAACCGTGGCTCTTTTGAA
GGATTTAAACAAGCTGCATCAGAAGAAAAATGGCTATATGTGCATGGACGTAAAGAGTGG
GAAAGTTACTACGCTAGAGAAAATCTCGAACGCCAAAAATCATTCTTTGATTTTTACCTT
AAAGAAGAAAATAACGATTGGAAAGATACGCCTCATGTCATATATGAAGTTAGAGATCAA
TTTTATAAAGGCGAATTCAAATCAGCGTCAGCGTTCCCTTTACCTAACACAGAATATACA
CCATTGTATTTAAATGCTGAAAATCACACATTGAATCATGCAAAGATTAGTAGCGCGTAT
GTCGCACAATATGACTCTGAAGATAAACGACAAGATGTAAGTTTTAAATATACGTTTGAC
AAAGATACTGAGTTAGTTGGAAACATGAACTTAAAACTATGGGTAAGCACTACAGACTCA
GACGATATGGATTTATTTGCAGGTATTAAAAAGTTAGATCGTCGTGGTAATGAAGTTAAC
TTCCCTGATTTTAATCATATTGAAAATGGTCAAGTAGCTACTGGTTGGTTACGCGTATCA
CATCGTGAATTAGATCAAGAAAAATCCACAATCGCGCAACCTTGGCATAAACATGAAACA
GAATTAAAGTTGTCACAAGATGAGATTGTACCTGTTGAAATCGAATTGTTACCTTCAGGC
ACGCTATTTAAACAAGGCGAAACATTGGAAGTTGTTGTAAAAGGTAGTGAAATTGTAATT
GGTAATAGTACCCCTGGCATGAAAACACGTTATGAACATGAAGAAACCATAAATAACGGC
ATGCACATGATTTATACTGGTGGTAAATATGATTCACAATTAATCATTCCTATCGTTAAT
TGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2380 [new locus tag: SA_RS13630 ]
- symbol: SA2380
- description: hypothetical protein
- length: 560
- theoretical pI: 5.21177
- theoretical MW: 64414.8
- GRAVY: -0.62125
⊟Function[edit | edit source]
- TIGRFAM: Unknown function Enzymes of unknown specificity hydrolase CocE/NonD family protein (TIGR00976; HMM-score: 256.9)
- TheSEED :
- Predicted acyl esterase/dipeptidyl-peptidase
- PFAM: GBD (CL0202) PepX_C; X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain (PF08530; HMM-score: 160.8)AB_hydrolase (CL0028) Peptidase_S15; X-Pro dipeptidyl-peptidase (S15 family) (PF02129; HMM-score: 145.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005113
- TAT(Tat/SPI): 0.000198
- LIPO(Sec/SPII): 0.000551
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNQHLLGNPKLTVTHVNEVKTGINHIVVDSVQYGNQEMIMEKDVTVEMRDGEKLYINIFRPNKDGKFPVVMSADTYGKDNKPKITNMGALWPTLGAIPTSSFTPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLSPWSKREAEDYYEVIEWAAKQPWSNGNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWIQGIFARWTDNPNIEDMIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWSTQGLHNRGSFEGFKQAASEEKWLYVHGRKEWESYYARENLERQKSFFDFYLKEENNDWKDTPHVIYEVRDQFYKGEFKSASAFPLPNTEYTPLYLNAENHTLNHAKISSAYVAQYDSEDKRQDVSFKYTFDKDTELVGNMNLKLWVSTTDSDDMDLFAGIKKLDRRGNEVNFPDFNHIENGQVATGWLRVSHRELDQEKSTIAQPWHKHETELKLSQDEIVPVEIELLPSGTLFKQGETLEVVVKGSEIVIGNSTPGMKTRYEHEETINNGMHMIYTGGKYDSQLIIPIVN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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