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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2493 [new locus tag: NWMN_RS14310 ]
- pan locus tag?: SAUPAN006278000
- symbol: NWMN_2493
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2493 [new locus tag: NWMN_RS14310 ]
- symbol: NWMN_2493
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2737971..2739653
- length: 1683
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331550 NCBI
- RefSeq: YP_001333527 NCBI
- BioCyc:
- MicrobesOnline: 3708095 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1681ATGAACCAACATTTACTAGGAAATCCAAAATTAACTGTAACTCATGTCAATGAAGTTAAA
GCCGGTATTAACCACATCGTTGTCGACAGTGTTCAATATGGAAATCAAGAAATGATTATG
GAAAAAGATGGCACTGTGGAAATGCGCGATGGCGAAAAATTATATATTAATATTTTCAGA
CCAAATAAAGATGGCAAATTCCCTGTAGTTATGTCTGCAGATACTTACGGTAAAGATAAT
AAGCCTAAAATCACAAATATGGGTGCCCTTTGGCCAACATTAGGTACCATTCCGACATCT
AGTTTTACACCTGAAGAATCACCAGACCCAGGATTTTGGGTGCCAAATGATTATGTTGTA
GTTAAAGTTGCATTACGCGGTAGTGACAAATCCAAAGGCGTCTTATCTCCATGGTCAAAA
AGAGAAGCGGAAGATTATTACGAAGTGATTGAATGGGCAGCAAATCAGTCATGGAGTAAT
GGAAATATCGGGACAAATGGTGTTTCTTATCTTGCGGTGACTCAATGGTGGGTCGCATCA
TTAAATCCACCACATTTAAAAGCAATGATTCCTTGGGAAGGCTTAAATGATATGTATAGA
GAAGTAGCCTTTCACGGAGGTATACCAGATACTGGCTTTTATCGTTTCTGGACTCAAGGT
ATTTTTGCGAGATGGACAGATAATCCAAATATCGAAGATTTGATTCAAGCACAACAAGAA
CATCCTCTGTTCGATGATTTTTGGAAACAGCGTCAAGTGCCATTATCACAAATTAAAACA
CCTCTACTAACATGTGCTAGTTGGTCTACACAAGGTTTGCACAACCGTGGCTCTTTTGAA
GGATTTAAACAAGCTGCATCTGAAGAAAAATGGCTATATGTGCATGGACGTAAAGAGTGG
GAAAGTTACTACGCTAGAGAAAATCTCGAACGCCAAAAATCATTCTTTGATTTTTACCTT
AAAGAAGAAAATAACGATTGGAAAGATACGCCTCATGTCATTTATGAAGTTAGAGATCAA
TTTTATAAAGGCGAATTCAAATCAGCGTCAGCGTTCCCTTTACCTAACGCAGAATATACA
CCATTGTATTTGAATGCTGAAAATCACACATTGAATCATGCAAAGATTAGTAGCGCGCAT
GTCGCACAATATGACTCTGAAGATAAACAACAAGATGTAAGTTTTAAATATACGTTTGAC
AAAGATACTGAGTTAGTTGGAAACATGAACTTAAAACTATGGGTAAGCACTAAAGACTCA
GATGATATGGATTTATTTGCAGGTATTAAAAAGTTAGATCGTCGTGGTAATGAAGTTAAC
TTCCCTGATTTTAATCATATTGAAAATGGTCAAGTAGCTACTGGTTGGTTACGCGTATCA
CATCGTGAATTAGATCAAGAAAAATCCTCAATCGCGCAACCTTGGCATAAACATGAAACA
GAATTAAAGTTGTCACAAGATGAGATTGTACCTGTTGAAATCGAATTGTTACCTTCAGGC
ACGCTATTTAAACAAGGCGAAACATTGGAAGTTGTTGTAAAGGGTAGTGAAATTGTAATT
GGTAATAGTACTCCTGGCATGAAAACACGTTATGAACATGAAGAAACCGTAAATAAAGGC
ATGCACATGATTTATACTGGTGGTAAATATGATTCACAATTAATCATTCCTATCGTTAAT
TGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2493 [new locus tag: NWMN_RS14310 ]
- symbol: NWMN_2493
- description: hypothetical protein
- length: 560
- theoretical pI: 5.29295
- theoretical MW: 64247.5
- GRAVY: -0.6375
⊟Function[edit | edit source]
- TIGRFAM: Unknown function Enzymes of unknown specificity hydrolase CocE/NonD family protein (TIGR00976; HMM-score: 255.6)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: GBD (CL0202) PepX_C; X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain (PF08530; HMM-score: 162)AB_hydrolase (CL0028) Peptidase_S15; X-Pro dipeptidyl-peptidase (S15 family) (PF02129; HMM-score: 142.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008891
- TAT(Tat/SPI): 0.00032
- LIPO(Sec/SPII): 0.000827
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNQHLLGNPKLTVTHVNEVKAGINHIVVDSVQYGNQEMIMEKDGTVEMRDGEKLYINIFRPNKDGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSNGNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWSTQGLHNRGSFEGFKQAASEEKWLYVHGRKEWESYYARENLERQKSFFDFYLKEENNDWKDTPHVIYEVRDQFYKGEFKSASAFPLPNAEYTPLYLNAENHTLNHAKISSAHVAQYDSEDKQQDVSFKYTFDKDTELVGNMNLKLWVSTKDSDDMDLFAGIKKLDRRGNEVNFPDFNHIENGQVATGWLRVSHRELDQEKSSIAQPWHKHETELKLSQDEIVPVEIELLPSGTLFKQGETLEVVVKGSEIVIGNSTPGMKTRYEHEETVNKGMHMIYTGGKYDSQLIIPIVN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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