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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0595 [new locus tag: SACOL_RS03085 ]
  • pan locus tag?: SAUPAN002321000
  • symbol: SACOL0595
  • pan gene symbol?: —
  • synonym:
  • product: M20/M25/M40 family peptidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0595 [new locus tag: SACOL_RS03085 ]
  • symbol: SACOL0595
  • product: M20/M25/M40 family peptidase
  • replicon: chromosome
  • strand: -
  • coordinates: 619624..620799
  • length: 1176
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    GTGTTAGATTGGTTCCAACTAGCAAATAATAAAGAAAATAAAACAATTCAACTCAGACGT
    TATTTACACCAATATCCTGAGTTATCTTTTGAAGAATTTCAAACACATGATTATATTGTT
    AACCAATTAAGCCAGTTATCTTGTGATATTGAAACTCCTATCGGCCGCAATGGTATCAAA
    GCCACATTTAAAGGCTTGGGCACAGGACCTACCATTGCATTAAGAGCTGACTTTGATGCG
    TTACCTGTCGAGGAATTAAACGATGTGCCTTATAAGTCTAAAAATCCAGGATGTATGCAT
    GCGTGTGGGCATGATGGTCATACAGCAATTTTACTTACTGTAGCAGAGATTTTAGATGAA
    CATAAACATTTATTAGAAGGTAATGTTGTATTAATATTCCAGTACGGTGAAGAAATCATG
    CCAGGTGGTTCTCAAGAAATGATAGATGCTGGATGTCTGGAAAATGTAGATAGAATTTAC
    GGTACACATTTATGGAGTGGTTATCCTACTGGAACTATTCATTCACGTGCGGGGGCAATC
    ATGGCCTCTCCAGATGAATTTAGCGTCACATTTAAAGGTCGTGGTGGTCATGGTGCCAAA
    CCTCATGAAACCATTGACCCAATAGTAATCATGGCAGAGTTCATTTTAAGTGCACAAAAA
    ATAATTTCACGTACGATCGATCCAGTTAAACAAGCTGTACTTTCATTTGGAATGATTCAA
    GCAGGCACCACAGATAGCGTTATTCCTGATCAAGCATTTTGTAAAGGTACAGTTAGAACT
    TTCGATTCAGATATACAGAATCATGTAATGGACAAAATGGATAAGCTTCTACAAGGTTTA
    GCAATAGCAAATGATATTAACTATGATTTGAATTATATTAAAGGGTATTTGCCTGTCCAT
    AATAACGAGAAAGCATATCAAGTTATTAAAGAAGCAACAAATGACTTACATGTACGCTTT
    AATGAATCAGATTTAATGATGATTGGAGAAGATTTTTCACATTATTTGAAAGTACGACCA
    GGTGCATTCTTTCTGACTGGTTGTGGTAATGAAAGTAAAGGTATTACAGCGCCACACCAT
    AATCCCAAATTTGATATTGATGAAAAATCATTAAAATACGCTGTAGCTGTATTTTTAAAA
    ATCATAGAATTAGAGCAAGTATTTAAAACAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1176

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0595 [new locus tag: SACOL_RS03085 ]
  • symbol: SACOL0595
  • description: M20/M25/M40 family peptidase
  • length: 391
  • theoretical pI: 5.65496
  • theoretical MW: 43657.4
  • GRAVY: -0.23555

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides amidohydrolase (TIGR01891; HMM-score: 385.9)
    and 6 more
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase, ArgE/DapE family (TIGR01910; EC 3.4.-.-; HMM-score: 38)
    Metabolism Amino acid biosynthesis Glutamate family acetylornithine deacetylase (ArgE) (TIGR01892; EC 3.5.1.16; HMM-score: 30.7)
    amidase, hydantoinase/carbamoylase family (TIGR01879; EC 3.5.-.-; HMM-score: 26.5)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01246; EC 3.5.1.18; HMM-score: 24.2)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 21.7)
    Metabolism Central intermediary metabolism Nitrogen metabolism allantoate amidohydrolase (TIGR03176; EC 3.5.3.9; HMM-score: 17.3)
  • TheSEED  :
    • N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
    Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Lysine Biosynthesis DAP Pathway  N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
  • PFAM:
    Peptidase_MH (CL0035) Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 114.2)
    and 2 more
    no clan defined M20_dimer; Peptidase dimerisation domain (PF07687; HMM-score: 38.3)
    Peptidase_MH (CL0035) Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008938
    • TAT(Tat/SPI): 0.000432
    • LIPO(Sec/SPII): 0.000589
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLDWFQLANNKENKTIQLRRYLHQYPELSFEEFQTHDYIVNQLSQLSCDIETPIGRNGIKATFKGLGTGPTIALRADFDALPVEELNDVPYKSKNPGCMHACGHDGHTAILLTVAEILDEHKHLLEGNVVLIFQYGEEIMPGGSQEMIDAGCLENVDRIYGTHLWSGYPTGTIHSRAGAIMASPDEFSVTFKGRGGHGAKPHETIDPIVIMAEFILSAQKIISRTIDPVKQAVLSFGMIQAGTTDSVIPDQAFCKGTVRTFDSDIQNHVMDKMDKLLQGLAIANDINYDLNYIKGYLPVHNNEKAYQVIKEATNDLHVRFNESDLMMIGEDFSHYLKVRPGAFFLTGCGNESKGITAPHHNPKFDIDEKSLKYAVAVFLKIIELEQVFKTN

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1] [2]
  • quantitative data / protein copy number per cell: 86 [3]
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)
  3. ↑ Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
    Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
    Sci Rep: 2016, 6;28172
    [PubMed:27344979] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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