From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0666 [new locus tag: SACOL_RS03445 ]
  • pan locus tag?: SAUPAN002477000
  • symbol: SACOL0666
  • pan gene symbol?: —
  • synonym:
  • product: iron compound ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0666 [new locus tag: SACOL_RS03445 ]
  • symbol: SACOL0666
  • product: iron compound ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 694740..695690
  • length: 951
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACATTTAATAAAGTATTATTGAGCTGGATAGTCATATTGATTATAACAACTAGCATA
    TATCTATTTTGGCAGTTGGGCGATATCAATGATGTATTTAACCAGTCTATTTTAATCAAT
    GTTAGATTACCGAGATTATTAGAAGCATTGTTGACAGGTATGATATTAACTGTTGCAGGC
    CTTATATTTCAAACAGTTTTAAATAATGCATTGGCAGATAGCTTTACATTAGGATTGGCA
    AGCGGCGCTACATTTGGTTCAGGATTAGCATTATTTTTAGGTTTAACAACGTTATGGATT
    CCTGTATTTTCAATAACATTTAGTTTGATAACATTAATAACTGTATTAGTCATTACGTCG
    GTATTGAGCCAAGGCTATCCAGTTAGAATCTTAATATTAAGTGGTTTAATGATTGGTGCG
    TTATTCAATTCACTTCTATATTTTTTGATTTTATTAAAACCTCGCAAATTAAATACAATT
    GCCAATTATCTGTTTGGTGGTTTTGGTGATGCAGAATACTCAAATGTATCTATAATAGCA
    ATCACATTTATCATTGCATTGTTTGGTATATTTATCATTCTTAATCAACTAAAGTTATTG
    CAATTAGGAGAACTAAAAAGTCAGTCACTAGGCTTAAATGTTCAATTGATTACATATATC
    GCGTTATGTATAGCTTCTATGATAACGGCGATAAATGTCGCATATGTTGGCATCATTGGA
    TTCATTGGTATGGTGATACCGCAACTCATTAGAAAATGGCAGTGGAAACAATCATTAGGA
    AGACAATTGGCTTTAAATATTGTAACTGGAGGACAAATAATGGTTATGGCAGATTTTATT
    GGTAGCCATATATTGTCACCAGTACAAATACCGGCAAGTATTATCATTGCATTAATTGGT
    ATACCAGTGTTATTTTACATGCTAATATCTCAGTCGAAACGGTTACACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    951

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0666 [new locus tag: SACOL_RS03445 ]
  • symbol: SACOL0666
  • description: iron compound ABC transporter permease
  • length: 316
  • theoretical pI: 10.0583
  • theoretical MW: 34604.6
  • GRAVY: 1.13924

⊟Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 121.6)
    and 1 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic (TIGR00327; HMM-score: 8)
  • TheSEED  :
    • Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)
    Stress Response Stress Response - no subcategory Flavohaemoglobin  Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 214.1)
    and 1 more
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 23.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005658
    • TAT(Tat/SPI): 0.000105
    • LIPO(Sec/SPII): 0.007409
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL0666&oldid=92514"