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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0567 [new locus tag: SA_RS03280 ]
  • pan locus tag?: SAUPAN002477000
  • symbol: SA0567
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0567 [new locus tag: SA_RS03280 ]
  • symbol: SA0567
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 661110..662060
  • length: 951
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACATTTAATAAAGTATTATTGAGCTGGATAGTCATATTGATTATAACAACTAGCATA
    TATCTATTTTGGCAGTTGGGGGATATCAATGATGTATTTAACCAGTCTATTTTAATCAAT
    GTTAGATTACCGAGATTATTAGAAGCATTGTTGACAGGTATGATATTAACAGTTGCAGGT
    CTTATATTTCAAACAGTTTTAAATAATGCATTGGCAGATAGCTTTACATTAGGATTGGCA
    AGCGGTGCTACATTTGGTTCAGGATTAGCATTATTTTTAGGTTTAACAACGTTATGGATT
    CCTGTATTTTCAATAACATTTAGTTTGATAACATTAATAACTGTATTAGTCATTACGTCG
    GTATTGAGCCAAGGCTATCCAGTTAGAATCTTAATATTAAGTGGTTTAATGATTGGTGCA
    TTATTCAATTCACTTCTATATTTTTTGATTTTATTAAAACCTCGCAAATTAAATACAATT
    GCCAATTATTTGTTTGGTGGCTTTGGTGATGCAGAATACTCAAATGTATCCATAATAGCA
    ATCACATTTATCATTGCACTGTTTGGTATATTTATCATTCTTAATCAACTAAAGTTATTG
    CAATTAGGAGAACTAAAAAGTCAGTCACTAGGCTTAAATGTTCAATTGATTACATATATC
    GCGTTATGTATAGCTTCTATGATAACGGCGATAAATGTCGCATATGTTGGCATCATTGGA
    TTCATTGGTATGGTGATACCACAACTCATTAGAAAATGGCAGTGGAAACAATCATTAGGA
    AGACAATTGGCTTTGAATATTGTAATTGGAGGACAAATAATGGTTATGGCAGATTTTATT
    GGTAGCCATATACTGTCACCAGTACAAATACCGGCAAGCATTATTATTGCATTAATTGGT
    ATACCAGTGTTATTTTACATGCTAATATCTCAGTCGAAACGGTTACACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    951

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0567 [new locus tag: SA_RS03280 ]
  • symbol: SA0567
  • description: hypothetical protein
  • length: 316
  • theoretical pI: 10.0583
  • theoretical MW: 34616.7
  • GRAVY: 1.1557

⊟Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 120.9)
    and 1 more
    Genetic information processing Protein fate Protein and peptide secretion and trafficking protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic (TIGR00327; HMM-score: 8.1)
  • TheSEED  :
    • Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)
    Stress Response Stress Response - no subcategory Flavohaemoglobin  Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)
  • PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 214.7)
    and 1 more
    ABC-3; ABC 3 transport family (PF00950; HMM-score: 24)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005658
    • TAT(Tat/SPI): 0.000105
    • LIPO(Sec/SPII): 0.007409
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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