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Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0893 [new locus tag: SACOL_RS04585 ]
  • pan locus tag?: SAUPAN002850000
  • symbol: SACOL0893
  • pan gene symbol?:
  • synonym:
  • product: pathogenicity island protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL0893 [new locus tag: SACOL_RS04585 ]
  • symbol: SACOL0893
  • product: pathogenicity island protein
  • replicon: chromosome
  • strand: +
  • coordinates: 908333..908479
  • length: 147
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    ATGAAAATGTATTTAGCTTATATCTGCTTAGTTTCATTGTTAACAATTTTATTACTAGCA
    ATATCTAACATGTATGTCGCTTTTAGCGTTTATGCTTGGCTAATAACTTTAGGATGTAAT
    TTAACAGGAGGATTAGAAAATGAATAA
    60
    120
    147

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL0893 [new locus tag: SACOL_RS04585 ]
  • symbol: SACOL0893
  • description: pathogenicity island protein
  • length: 48
  • theoretical pI: 4.25803
  • theoretical MW: 5347.47
  • GRAVY: 1.24792

Function[edit source | edit]

  • TIGRFAM:
  • TheSEED:  
    Phages, Prophages, Transposable elements, PlasmidsPathogenicity islandsStaphylococcal pathogenicity islands SaPI Hypothetical SAV0787 homolog in superantigen-encoding pathogenicity islands SaPI
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP: N-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: FSVYAWLI
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.154931
    • TAT(Tat/SPI): 0.001919
    • LIPO(Sec/SPII): 0.11186
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKMYLAYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]