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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0893 [new locus tag: SACOL_RS04585 ]
- pan locus tag?: SAUPAN002850000
- symbol: SACOL0893
- pan gene symbol?: —
- synonym:
- product: pathogenicity island protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0893 [new locus tag: SACOL_RS04585 ]
- symbol: SACOL0893
- product: pathogenicity island protein
- replicon: chromosome
- strand: +
- coordinates: 908333..908479
- length: 147
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3237979 NCBI
- RefSeq: YP_185764 NCBI
- BioCyc: see SACOL_RS04585
- MicrobesOnline: 912364 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121ATGAAAATGTATTTAGCTTATATCTGCTTAGTTTCATTGTTAACAATTTTATTACTAGCA
ATATCTAACATGTATGTCGCTTTTAGCGTTTATGCTTGGCTAATAACTTTAGGATGTAAT
TTAACAGGAGGATTAGAAAATGAATAA60
120
147
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0893 [new locus tag: SACOL_RS04585 ]
- symbol: SACOL0893
- description: pathogenicity island protein
- length: 48
- theoretical pI: 4.25803
- theoretical MW: 5347.47
- GRAVY: 1.24792
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- LocateP: N-terminally anchored (with CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: FSVYAWLI
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.154931
- TAT(Tat/SPI): 0.001919
- LIPO(Sec/SPII): 0.11186
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKMYLAYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.