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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1123 [new locus tag: SACOL_RS05735 ]
- pan locus tag?: SAUPAN003341000
- symbol: pyc
- pan gene symbol?: pycA
- synonym:
- product: pyruvate carboxylase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1123 [new locus tag: SACOL_RS05735 ]
- symbol: pyc
- product: pyruvate carboxylase
- replicon: chromosome
- strand: +
- coordinates: 1132473..1135925
- length: 3453
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237822 NCBI
- RefSeq: YP_185987 NCBI
- BioCyc: see SACOL_RS05735
- MicrobesOnline: 912591 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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3421TTGAAACAAATAAAAAAGTTACTTGTTGCTAACCGTGGAGAAATTGCAATTCGTATATTC
AGAGCGGCGGCAGAATTAGACATCAGCACAGTTGCAATTTATTCGAATGAAGACAAAAGT
TCATTACATAGATATAAAGCAGATGAATCCTATTTAGTTGGAAGTGATTTAGGTCCTGCT
GAAAGTTATTTAAATATTGAGCGTATCATTGATGTAGCAAAACAAGCGAATGTGGATGCG
ATTCATCCTGGCTATGGATTTTTAAGTGAAAATGAACAATTTGCGCGTCGTTGTGCAGAA
GAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGATATGTTTGGAGATAAAGTT
AAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATTCCTGGTACAGACGGTCCA
ATTAAATCATATGAATTAGCAAAAGAATTTGCAGAAGAAGCTGGTTTCCCGCTAATGATT
AAAGCCACAAGTGGTGGCGGCGGTAAAGGTATGAGAATCGTTCGTGAAGAAAGTGAATTA
GAAGATGCTTTCCATAGAGCAAAATCAGAAGCTGAAAAATCATTTGGTAATAGTGAAGTT
TACATAGAAAGATACATTGATAATCCAAAGCATATTGAAGTACAAGTCATAGGTGACGAA
CATGGAAATATCGTACACTTATTTGAACGTGATTGTTCAGTACAACGTCGTCATCAAAAA
GTTGTAGAAGTTGCACCATCAGTTGGATTATCATCAACATTACGTCAACGTATTTGTGAT
GCTGCAATTCAATTGATGGAAAATATTAAATATGTCAATGCAGGTACTGTTGAATTTCTA
GTATCTGGTGACGAATTCTTCTTTATAGAAGTTAACCCTCGTGTACAAGTAGAGCATACA
ATTACAGAGATGGTAACAGGAATTGATATTGTTAAGACACAAATTTTAGTTGCAGCAGGT
GCCGATTTATTTGGTGAAGAGATTAATATGCCGCAACAAAAAGATATTACAACATTAGGC
TATGCCATCCAATGTCGTATTACAACAGAAGATCCGTTAAATGATTTCATGCCGGATACT
GGAACAATCATTGCTTATCGTTCAAGCGGGGGCTTTGGTGTACGTCTTGATGCTGGAGAT
GGTTTCCAAGGTGCTGAGATATCACCTTATTATGATTCATTACTCGTAAAATTATCTACA
CACGCGATATCATTTAAACAAGCAGAAGAAAAAATGGTACGCTCATTACGAGAAATGCGT
ATTCGTGGTGTTAAAACTAATATTCCATTCTTAATTAATGTAATGAAGAATAAAAAGTTC
ACAAGTGGTGATTACACAACTAAATTTATTGAAGAAACACCAGAACTTTTCGACATTCAG
CCGTCTCTAGATAGAGGTACTAAAACATTAGAATATATAGGTAATGTAACAATTAATGGT
TTCCCAAATGTTGAGAAACGTCCGAAACCAGACTATGAATTAGCATCAATTCCAACTGTA
TCTTCAAGTAAAATCGCTTCATTTAGTGGTACGAAACAATTGCTTGATGAAGTAGGTCCA
AAAGGTGTAGCTGAATGGGTTAAAAAGCAGGATGATGTCTTACTAACAGATACAACCTTT
AGAGATGCACACCAATCATTATTAGCTACACGAGTTAGAACTAAGGATATGATTAATATC
GCATCCAAAACAGCGGACGTATTTAAAGATGGTTTCTCACTAGAAATGTGGGGCGGTGCT
ACATTTGATGTGGCATATAATTTCTTGAAGGAAAACCCATGGGAACGACTTGAACGTCTA
CGTAAAGCTATTCCAAATGTATTATTCCAAATGTTGTTACGTGCTTCAAACGCAGTTGGT
TATAAAAACTATCCTGATAATGTTATTCATAAATTCGTACAAGAAAGTGCTAAAGCAGGC
ATAGATGTCTTTAGAATTTTCGATTCATTAAACTGGGTAGATCAAATGAAAGTTGCCAAT
GAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATTTGTTATACAGGTGACATT
TTAAATCCTGAGCGATCAAACATTTATACTTTAGAGTATTATGTCAAACTAGCTAAAGAG
TTAGAACGTGAAGGTTTCCATATTTTAGCGATTAAAGATATGGCAGGCTTATTAAAACCT
AAAGCCGCTTACGAATTGATTGGTGAGTTAAAATCAGCTGTAGATTTACCAATTCATCTT
CACACTCATGATACAAGTGGTAATGGTTTATTAACATACAAACAAGCAATAGATGCTGGT
GTCGATATCATTGATACTGCTGTTGCTTCAATGAGTGGTTTAACAAGTCAGCCAAGCGCC
AATTCGTTATATTATGCATTAAATGGCTTCCCACGCCACCTTAGAACTGATATTGAAGGT
ATGGAGTCACTTAGTCATTATTGGTCAACTGTACGTACTTATTATTCAGACTTTGAAAGT
GATATCAAATCACCGAATACTGAAATTTATCAACATGAAATGCCTGGTGGACAGTATTCG
AATTTAAGTCAACAAGCTAAAAGTTTAGGTTTAGGCGAAAGATTTGATGAAGTCAAAGAT
ATGTATCGCAGAGTGAATTTCTTATTTGGTGATATCGTAAAAGTAACACCATCGTCTAAA
GTAGTTGGTGATATGGCACTTTATATGGTACAAAATGATCTTGATGAACAATCCGTGATT
ACAGATGGCTATAAATTAGATTTCCCAGAATCAGTAGTGTCGTTCTTCAAAGGTGAAATA
GGACAACCTGTAAATGGTTTTAATAAAGATTTACAAGCGGTTATTTTAAAAGGCCAAGAA
GCACTAACAGCTCGTCCAGGTGAATATCTAGAGCCAGTTGATTTTGAAAAAGTCCGTGAG
TTGCTTGAAGAAGAGCAACAAGGTCCTGTTACGGAGCAAGATATTATTAGTTATGTACTA
TATCCAAAAGTATATGAACAATATATTCAAACTAGAAATCAATACGGAAACTTATCGTTA
CTTGATACGCCTACATTCTTCTTTGGAATGCGTAATGGTGAAACAGTAGAAATCGAAATC
GATAAAGGTAAACGATTAATTATTAAACTAGAAACGATTAGTGAACCAGATGAAAATGGT
AATAGAACGATTTACTATGCGATGAATGGTCAAGCGAGACGTATTTACATTAAAGATGAA
AATGTGCATACAAATGCGAACGTTAAGCCAAAAGCAGATAAGAGTAATCCAAGTCATATC
GGTGCTCAAATGCCAGGTTCAGTAACTGAAGTCAAGGTTAGTGTAGGTGAAACTGTGAAA
GCTAATCAGCCGTTGCTAATTACTGAAGCTATGAAAATGGAAACAACAATTCAAGCACCA
TTTGACGGTGTGATTAAACAAGTAACTGTAAATAATGGTGACACAATAGCGACAGGCGAT
TTATTAATCGAAATTGAAAAAGCAACTGACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1123 [new locus tag: SACOL_RS05735 ]
- symbol: Pyc
- description: pyruvate carboxylase
- length: 1150
- theoretical pI: 4.9295
- theoretical MW: 128547
- GRAVY: -0.325913
⊟Function[edit | edit source]
- reaction: EC 6.4.1.1? ExPASyPyruvate carboxylase ATP + pyruvate + HCO3(-) = ADP + phosphate + oxaloacetate
- TIGRFAM: Energy metabolism Glycolysis/gluconeogenesis pyruvate carboxylase (TIGR01235; EC 6.4.1.1; HMM-score: 1797.3)and 28 moreFatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxylase subunit (TIGR00514; EC 6.3.4.14; HMM-score: 547.8)Central intermediary metabolism Nitrogen metabolism urea carboxylase (TIGR02712; EC 6.3.4.6; HMM-score: 532.2)Transport and binding proteins Cations and iron carrying compounds oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 487.6)Energy metabolism Other oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 487.6)Purines, pyrimidines, nucleosides, and nucleotides Pyrimidine ribonucleotide biosynthesis carbamoyl-phosphate synthase, large subunit (TIGR01369; EC 6.3.5.5; HMM-score: 68.6)Energy metabolism Pyruvate dehydrogenase dihydrolipoyllysine-residue acetyltransferase (TIGR01348; EC 2.3.1.12; HMM-score: 43.4)alpha-L-glutamate ligase, RimK family (TIGR00768; EC 6.3.2.-; HMM-score: 42.8)Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan D-alanine--D-alanine ligase (TIGR01205; EC 6.3.2.4; HMM-score: 41.5)Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylglycinamide formyltransferase 2 (TIGR01142; EC 2.1.2.-; HMM-score: 39.3)Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylaminoimidazole carboxylase, ATPase subunit (TIGR01161; EC 4.1.1.21; HMM-score: 39.2)Transport and binding proteins Unknown substrate efflux transporter, RND family, MFP subunit (TIGR01730; HMM-score: 34.3)Fatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxyl carrier protein (TIGR00531; HMM-score: 34)homocitrate synthase (TIGR02146; EC 2.3.3.14; HMM-score: 32.3)Biosynthesis of cofactors, prosthetic groups, and carriers Other homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 32)Central intermediary metabolism Nitrogen fixation homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 32)lysine biosynthesis enzyme LysX (TIGR02144; HMM-score: 28.9)isopropylmalate/citramalate/homocitrate synthases (TIGR02090; HMM-score: 26.5)Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylamine--glycine ligase (TIGR00877; EC 6.3.4.13; HMM-score: 25.6)Energy metabolism TCA cycle dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex (TIGR01347; EC 2.3.1.61; HMM-score: 23.7)Energy metabolism Other 4-hydroxy-2-oxovalerate aldolase (TIGR03217; EC 4.1.3.39; HMM-score: 23.7)Cellular processes Biosynthesis of natural products cyanophycin synthetase (TIGR02068; EC 6.3.2.29,6.3.2.30; HMM-score: 23.2)2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (TIGR02927; EC 2.3.1.61; HMM-score: 22.1)Transport and binding proteins Other efflux pump membrane protein (TIGR00998; HMM-score: 18.9)Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 15.9)Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 15.9)Amino acid biosynthesis Other pyrrolysine biosynthesis protein PylC (TIGR03909; HMM-score: 15.8)Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 13.9)Transport and binding proteins Other membrane fusion protein cluster 2 protein (TIGR00999; HMM-score: 12.7)
- TheSEED :
- Pyruvate carboxylase (EC 6.4.1.1)
- PFAM: ATP-grasp (CL0179) CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain (PF02786; HMM-score: 259.1)Post-HMGL (CL0597) PYC_OADA; Conserved carboxylase domain (PF02436; HMM-score: 247.1)and 17 morePreATP-grasp (CL0483) Biotin_carb_N; Biotin carboxylase, N-terminal domain (PF00289; HMM-score: 145.6)Hybrid (CL0105) Biotin_carb_C; Biotin carboxylase C-terminal domain (PF02785; HMM-score: 111.8)TIM_barrel (CL0036) HMGL-like; HMGL-like (PF00682; HMM-score: 94.3)Hybrid (CL0105) Biotin_lipoyl; Biotin-requiring enzyme (PF00364; HMM-score: 68.7)ATP-grasp (CL0179) ATPgrasp_Ter; ATP-grasp in the biosynthetic pathway with Ter operon (PF15632; HMM-score: 48.7)ATP-grasp; ATP-grasp domain (PF02222; HMM-score: 43.4)Dala_Dala_lig_C; D-ala D-ala ligase C-terminus (PF07478; HMM-score: 37.7)Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 37.3)ATP-grasp (CL0179) ATP-grasp_3; ATP-grasp domain (PF02655; HMM-score: 33.2)Hybrid (CL0105) HlyD_D23; Barrel-sandwich domain of CusB or HlyD membrane-fusion (PF16576; HMM-score: 28)HlyD_3; HlyD family secretion protein (PF13437; HMM-score: 26.1)ATP-grasp (CL0179) RimK; RimK-like ATP-grasp domain (PF08443; HMM-score: 24)ATP-grasp_4; ATP-grasp domain (PF13535; HMM-score: 16.2)GARS_A; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (PF01071; HMM-score: 14.1)Hybrid (CL0105) RnfC_N; RnfC Barrel sandwich hybrid domain (PF13375; HMM-score: 14)GCV_H; Glycine cleavage H-protein (PF01597; HMM-score: 12.9)POTRA (CL0191) YqfD; Putative stage IV sporulation protein YqfD (PF06898; HMM-score: 10.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors: biotin
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008855
- TAT(Tat/SPI): 0.000494
- LIPO(Sec/SPII): 0.001059
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVEKRPKPDYELASIPTVSSSKIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKATD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator: CodY (repression) regulon
CodY (TF) important in Amino acid metabolism; RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: 58.31 h [6]
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS One: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e) - ↑ Kristina Hempel, Jan Pané-Farré, Andreas Otto, Susanne Sievers, Michael Hecker, Dörte Becher
Quantitative cell surface proteome profiling for SigB-dependent protein expression in the human pathogen Staphylococcus aureus via biotinylation approach.
J Proteome Res: 2010, 9(3);1579-90
[PubMed:20108986] [WorldCat.org] [DOI] (I p) - ↑ Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
J Proteome Res: 2011, 10(4);1657-66
[PubMed:21323324] [WorldCat.org] [DOI] (I p) - ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p) - ↑ Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
Sci Rep: 2016, 6;28172
[PubMed:27344979] [WorldCat.org] [DOI] (I e) - ↑ Stephan Michalik, Jörg Bernhardt, Andreas Otto, Martin Moche, Dörte Becher, Hanna Meyer, Michael Lalk, Claudia Schurmann, Rabea Schlüter, Holger Kock, Ulf Gerth, Michael Hecker
Life and death of proteins: a case study of glucose-starved Staphylococcus aureus.
Mol Cell Proteomics: 2012, 11(9);558-70
[PubMed:22556279] [WorldCat.org] [DOI] (I p)