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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1754
  • pan locus tag?: SAUPAN004358000
  • symbol: SACOL1754
  • pan gene symbol?: —
  • synonym:
  • product:

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: pseudogene
  • locus tag: SACOL1754
  • symbol: SACOL1754
  • product:
  • replicon: chromosome
  • strand: -
  • coordinates: 1795258..1795946
  • length: 689
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAAGTTATCATTTCATGGTCAATCAACGATTTATTTAGAAGGGAACAACAAAAAGGTT
    ATCGTAGATCCGTTTATTTCAAATAACCCTAAGTGTGATTTGAATATTGAAACAGTGCAG
    GTAGACTATATCGTTTTAACGCACGGTCATTTTGATCATTTTGGTGATGTTGTGGAACTA
    GCAAAGAAAACAGGAGCAACAGTAATTGGAAGTGCAGAAATGGCTGACTATCTTTCTTCA
    TATCACGGTGTTGAAAATGTTCATGGTATGAATATTGGTGGTAAAGCAAACTTTGATTTC
    GGAAGCGTTAAATTTGTTCAAGCATTTCATAGTTCAAGTTTTACACATGAAAATGGTATT
    CCAGTTTATTTAGGTATGCCAATGGGTATCGTGTTTGAAGTTGAAGGAAAAACAATTTAT
    CATACTGGTGATACAGGTCTGTTTAGTGACATGTCCTTATTGCGAAACGTCATCCAGTTG
    ATGTATGTTTTGTACCAATTGGAGATAATTTTACGATGGGTATTGATGATGCAAGTTATG
    CTATTAATGAATTTATTAAACCAAAAATTTCTGTACCGATTCATTATGATACATTCCCAT
    TAATCGAACAAGATCCACAACAATTTAAAGATGCTGTTAATGTAGGGGACGTGCAAATTT
    TAAAACCAGGTGAATCTGTTCAGTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    689

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1754
  • symbol: SACOL1754
  • description:
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: SigB* (activation) regulon
    SigB*(sigma factor)controlling a large regulon involved in stress/starvation response and adaptation;  [1]   other strains

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jan Pané-Farré, Beate Jonas, Konrad Förstner, Susanne Engelmann, Michael Hecker
    The sigmaB regulon in Staphylococcus aureus and its regulation.
    Int J Med Microbiol: 2006, 296(4-5);237-58
    [PubMed:16644280] [WorldCat.org] [DOI] (P p)

⊟Relevant publications[edit | edit source]

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