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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1859 [new locus tag: SACOL_RS09535 ]
- pan locus tag?: SAUPAN004553000
- symbol: SACOL1859
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1859 [new locus tag: SACOL_RS09535 ]
- symbol: SACOL1859
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1909269..1912319
- length: 3051
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237780 NCBI
- RefSeq: YP_186687 NCBI
- BioCyc: see SACOL_RS09535
- MicrobesOnline: 913301 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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3001ATGGAAGAAGGTTATCGATTAAAGTTTATATTTATTGGAAATCAAAATAATAATATTAAA
AATAAGAATTTTTCAAATCCACATAATATATTATTCGATAGTAAAAAAGATATTATTTTA
ACTCAAGACTTATGCGAAGAGTTTTTGAATTTAAACATAAATAAGCAAGATCACGCTATT
GAATTATTAAAAAAAGAATTATCTCCGCTTTTATTTGAAGATTCTTTGTCATATTTAAAA
GAAGAATTTATTAATGAAAAATTAGAATTTAATATATCGAATTTAGCTTCACGATATACT
GCGAATAATGATGTCGATACTATTAATAATAAAATTATAGAAGGTATTTCTATTACCAAT
AATTTTAAATATACTAATATTTCATATCTAAAAGAATTAAAAGGTTATATCGAAAATGAT
ATTTTAGATAAGATGAAATCAAAATACGCAAAGAATATTTATTTGAATTTCAAAAAAATA
TTCTCTAATTTAGAACAATCAGTCAATAATTATTTGGAACTGGAAGAAGAGTTTGAAGAA
AAGAAAAAATACTTAAGTGAAATTTATGAATTGATAGACGAAATTAATATTGACCCTTAT
ATTTTTCTGACAGAACATAATGAATGTAATATATACAAAATAAGTGAGAATGAAAAATTA
GAACTTCAAACTTATATGAGTAAAATCGAAAAAGTATTATTAAAATATCAAACGTATTTA
AAAGAAACATGTAAAGAATGCTTGTTTTATCCTTATTTGCTAGTTCAAGGTGAAGCTGGC
ATAGGAAAATCACACCTTTTAGCGCATCTATCTAAAAAACTTAGAGATGAAAATCATATT
ATTTATCTGTTTTTGGGACAATTTTTTACTAAAAATGAAGATCCATGGCATCAAATACTT
AATGATTTAGAAGTTACAAATTCTGTTGATAATTTTTTAAGGTCAATAAGTAATAAGGCC
AAAGAAACAAAAAAAAGAGCTTTTATTATTATTGATGCGCTTAATGAAGGTGAAGGTAAA
AGGTTATGGGGAAATTATTTTCAAAGCTTTATCAACCATATAAAGAAGTATTCTAATATA
GCTTTAATATTTTCTATTAGAACCCCTTTTGAAGATGTTATATTACCCAAAAACGCAATA
CAAGATAACAATATTGTAGTATTTCAGCATGAAGGTTTTAGTAAGGAAGAAAACTATAAT
CCAATTGTATCTTTTTGTGATTTTTATGGATTAGAGCTACCTAAGTTACCTATATTAAAT
CCAGAATTCAACAATCCATTATTTTTAAAACTAATGTGTGAGTACTGTGTAAATAAATTT
AAGGAATTTGACCAAACTATAAGTGTTGCAGAGCTATTTACAAATGTTCTTAAGACAGTA
AATATTAATTTATCTAAGGAAGATAAATTTGATTTTGATAAAAATATTAATGTTGTACAA
AAAGTAATAAAAGGATTAGTTGAATTAATGAACGACTCAGAATTTAATCAACTAAATTAT
GAGGAATCCTATACTGTTGTTAATAATATAGCTAAAGAGTATGTTCAAAAGTCAAATAGA
TTTTTAGAAGCGCTAATAGATGAAAATATATTAATTAAAAATACTGGCTATAAAGGTGAA
ATGATTATTTATTTTTCGTATGAGCGTATGGGAGATTACTTTTTATCAGAATACCTTTTA
GAGAAATATAGAAATGTTGATAAAAGAGATTTAGTAACTAAATTACAGTCAGATGAAAAA
GTGACAAGGTATTTTCAAAAGGAAGACGATTTATCTTATAATAGAGGTCTTATTAATGAA
CTTTTTATTAAATTAGCAAATGAATTTAATATAGAGCTATTTGAAGTATTTCCACAGTTT
AAAAACAATTATAACATGATATATTCTTTTATAAATAGTTTAGTATGGAGAAAAGATGGT
AGCATAAGTAAACATACTAAATGCTATATATCCGATAATGTTATTCCTTATGATGCATTT
AGAAATAATTTTTTAGATGTCTTATTAATAAAAATGCCTCAAAAAAACCATCCGTTAAAT
ATTTGGGCTTTACATAAATTATTGAAACAATGCAATTTAGGAAAAAGAGATTTTTTATGG
ACTCAATATATATCTATAAATAATGAAAAGGTTTTTGAAATTATTAATTGGCTATTTAGT
AACTATAAGAAATTAGATGAAGAAACTGCGGAAAAATATATGATTTTTTTAACGTGGATA
TTTTCTGCAACTAATAATAAATTAAGAGATCTCGGTACTAAATCTTTAGTAAAATTATTC
AAAACATTTCCAACTAAAATTATTGGTTTATTAAAATTATTTGAAAATAACAATGATCCA
TATATAGTCGAAAGATTATATGCTTCTGTTTTAGGGGCGACACTTCGAATCGACATTTGT
GAAATACATATAGAGATTGCTAATTATATTTATGAAGAAATATTTGATAAAGAAATGGTA
TATCCTCATATTTTAATGAGAGATTATGCTAGGCAAACAATTGAATATATTAGTTTATCA
AAAGATATATCTAATATAAATTTAGAAAAAATTAGGCCACCTTATAAAAGTAATTGGTAT
AAAAAAGAATATTCGAATTTAAATATAGACGATTACATAAAATCTTTAAAAAACAAATTA
GATAGCCATTTACATTTTTCTATCGATAAAATTAAAAACTCAATGACAACGGAATATGGA
AGAGGAACTGGGGCATATGGCGATTTTGGCAGATATGTATTTGGTTATGCTGTACGAAAC
TGGGTAAAGGGTTTTAAAAGTGATCAAGACTTAAGTAATATAGCATTAATGAGGATTTTT
GAAATGGGTTATGATGCAAAATTACATGGTGAATTTGATATGTGGGTTAATCGTTATGAT
AACTTTAATAATTCAATTGAAAGAATTAGCAAAAAATATCAATGGATTGCTTACTATGAA
ATTTTAGCTAAACTTGTAGATAAATTTCCTGATGTTCAATATTCTGGACTATGGGATGAT
TATATTAGAGATATTGATCCTACTTTACTATTACTTGAAATTGATAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1859 [new locus tag: SACOL_RS09535 ]
- symbol: SACOL1859
- description: hypothetical protein
- length: 1016
- theoretical pI: 5.76406
- theoretical MW: 120680
- GRAVY: -0.414665
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 21.1)and 1 moreCellular processes Toxin production and resistance TOMM system kinase/cyclase fusion protein (TIGR03903; HMM-score: 10.4)
- TheSEED :
- [Genomic island nu Sa beta2]
- PFAM: P-loop_NTPase (CL0023) AAA_16; AAA ATPase domain (PF13191; HMM-score: 22.4)NACHT; NACHT domain (PF05729; HMM-score: 22.2)AAA_22; AAA domain (PF13401; HMM-score: 20.5)and 4 moreRNA_helicase; RNA helicase (PF00910; HMM-score: 13.7)ABC_tran; ABC transporter (PF00005; HMM-score: 13.1)no clan defined ANT; Phage antirepressor protein KilAC domain (PF03374; HMM-score: 12.8)DUF1284; Protein of unknown function (DUF1284) (PF06935; HMM-score: 8.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002336
- TAT(Tat/SPI): 0.000072
- LIPO(Sec/SPII): 0.000302
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEEGYRLKFIFIGNQNNNIKNKNFSNPHNILFDSKKDIILTQDLCEEFLNLNINKQDHAIELLKKELSPLLFEDSLSYLKEEFINEKLEFNISNLASRYTANNDVDTINNKIIEGISITNNFKYTNISYLKELKGYIENDILDKMKSKYAKNIYLNFKKIFSNLEQSVNNYLELEEEFEEKKKYLSEIYELIDEINIDPYIFLTEHNECNIYKISENEKLELQTYMSKIEKVLLKYQTYLKETCKECLFYPYLLVQGEAGIGKSHLLAHLSKKLRDENHIIYLFLGQFFTKNEDPWHQILNDLEVTNSVDNFLRSISNKAKETKKRAFIIIDALNEGEGKRLWGNYFQSFINHIKKYSNIALIFSIRTPFEDVILPKNAIQDNNIVVFQHEGFSKEENYNPIVSFCDFYGLELPKLPILNPEFNNPLFLKLMCEYCVNKFKEFDQTISVAELFTNVLKTVNINLSKEDKFDFDKNINVVQKVIKGLVELMNDSEFNQLNYEESYTVVNNIAKEYVQKSNRFLEALIDENILIKNTGYKGEMIIYFSYERMGDYFLSEYLLEKYRNVDKRDLVTKLQSDEKVTRYFQKEDDLSYNRGLINELFIKLANEFNIELFEVFPQFKNNYNMIYSFINSLVWRKDGSISKHTKCYISDNVIPYDAFRNNFLDVLLIKMPQKNHPLNIWALHKLLKQCNLGKRDFLWTQYISINNEKVFEIINWLFSNYKKLDEETAEKYMIFLTWIFSATNNKLRDLGTKSLVKLFKTFPTKIIGLLKLFENNNDPYIVERLYASVLGATLRIDICEIHIEIANYIYEEIFDKEMVYPHILMRDYARQTIEYISLSKDISNINLEKIRPPYKSNWYKKEYSNLNIDDYIKSLKNKLDSHLHFSIDKIKNSMTTEYGRGTGAYGDFGRYVFGYAVRNWVKGFKSDQDLSNIALMRIFEMGYDAKLHGEFDMWVNRYDNFNNSIERISKKYQWIAYYEILAKLVDKFPDVQYSGLWDDYIRDIDPTLLLLEIDK
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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