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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2124 [new locus tag: SACOL_RS11115 ]
  • pan locus tag?: SAUPAN005428000
  • symbol: SACOL2124
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2124 [new locus tag: SACOL_RS11115 ]
  • symbol: SACOL2124
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2185210..2186403
  • length: 1194
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGACAAATAATGGTAATGAGCCGAACTTAACGTTAAGTGATTTATATGACAAAGATGTT
    GTCTATACGTCAAGACCTTCGTATATATCGAATCCATGGTTGAAACCGGACGAACATCAA
    TCTAATTTTTTAACTGGTAGGGAGTTATTAATAGCAAATCAATTACCTGTTATTGTTCAC
    GAAGCTAGTGCGACAGACAAATTGCATCAGCTATTTCAAGTTATTGGTAAGGAAGTACCG
    AACTCAATTTATACATTTAACAATCAGCAATCTTACGAAAACTTGATCAAACAATTGGCA
    CATAAGGAAAATAAAAAGATTTATTTTCAATATATTCATGATGAAACAATCTTGAATCAG
    CAATATTATGCATTAGATAAAACGTTATTTGTTGCTTTAAATAATAAAGCAAGAATACCT
    GAATGGACAAATGGGAAGTTTTTACCAAAAAGAAAAGTTGTAAAAATTGAGCAATTCGAA
    AACGAGATTAAGAATTGGGAATTCCCGTTAGTAATTAAGCCGGGAGATGATCTTCCGACA
    GCAGGTGGCTATGGCGTTATGATTTGTTATCATGATGCAGATTTACAAAAAGCGATAACG
    CGTATTAAAGAGGCAACTGCTGAAACGAATTCGCTTATTATCGAACAGAAGATTGAAGAA
    AAAGCGAATTATTGCGTTCAGTTTGCATACTCGGAATCGCTAGGCATTCAATATCTTGGT
    GCGGCAACGCAATTAACGGATAAGTACGGATTTTATAACGGAAATGAAAATACTACTAAT
    GTACCAGAGCACGTTATAGAAGCAGGTAGACAAATTATGGAAAACGGTGTGAATCAAGGA
    TTCTTTGGTGTAGCTGGTTTTGACCTACTCGTCGATGAGGATGATAACGTTTATGCGATT
    GATTTAAACTTTAGACAAAATGGTTCAACGAGCATGTTATTACTTGCTAACGAGTTGAAT
    TCAGGATATCAAAAGTTTTATAGTTATCATTCAAAAGGTGATAACACACATTTCTTCAAT
    ACGATTTTGAAATATGTCAAAGAAGGTAGTTTATACCCGTTATCTTATTATGATGGTGAT
    TGGTACGGTGAAGATAAAGTTAAATCAAGGTTTGGCTGTATTTGGCATGGTGATTCAAAA
    GAAACAGTACTGGAGAATGAACGCGCATTTTTAGCTGAACTTGAACACTATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1194

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL2124 [new locus tag: SACOL_RS11115 ]
  • symbol: SACOL2124
  • description: hypothetical protein
  • length: 397
  • theoretical pI: 4.91145
  • theoretical MW: 45645.7
  • GRAVY: -0.537783

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxylase subunit (TIGR00514; EC 6.3.4.14; HMM-score: 11.2)
  • TheSEED:  
    Hypothetical protein SAV2132
  • PFAM:
    ATP-grasp (CL0179) ATP-grasp_4; ATP-grasp domain (PF13535; HMM-score: 19.9)
    Peptidase_CA (CL0125) Peptidase_C101; Peptidase family C101 (PF16218; HMM-score: 16.1)
    and 2 more
    no clan defined DUF3182; Protein of unknown function (DUF3182) (PF11379; HMM-score: 15.9)
    ATP-grasp (CL0179) CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain (PF02786; HMM-score: 13.5)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004537
    • TAT(Tat/SPI): 0.000646
    • LIPO(Sec/SPII): 0.000764
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTNNGNEPNLTLSDLYDKDVVYTSRPSYISNPWLKPDEHQSNFLTGRELLIANQLPVIVHEASATDKLHQLFQVIGKEVPNSIYTFNNQQSYENLIKQLAHKENKKIYFQYIHDETILNQQYYALDKTLFVALNNKARIPEWTNGKFLPKRKVVKIEQFENEIKNWEFPLVIKPGDDLPTAGGYGVMICYHDADLQKAITRIKEATAETNSLIIEQKIEEKANYCVQFAYSESLGIQYLGAATQLTDKYGFYNGNENTTNVPEHVIEAGRQIMENGVNQGFFGVAGFDLLVDEDDNVYAIDLNFRQNGSTSMLLLANELNSGYQKFYSYHSKGDNTHFFNTILKYVKEGSLYPLSYYDGDWYGEDKVKSRFGCIWHGDSKETVLENERAFLAELEHY

Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
    experimental localization: Cytoplasmic [1] [2] [3]
    quantitative data / protein copy number per cell: 334 [4]

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise    transcription unit transferred from N315 data RegPrecise  

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

  1. Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
    J Proteome Res: 2011, 10(4);1657-66
    [PubMed:21323324] [WorldCat.org] [DOI] (I p)
  3. Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)
  4. Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
    Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
    Sci Rep: 2016, 6;28172
    [PubMed:27344979] [WorldCat.org] [DOI] (I e)

Relevant publications[edit | edit source]