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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS00055 [old locus tag: SACOL0007 ]
  • pan locus tag?: SAUPAN000013000
  • symbol: SACOL_RS00055
  • pan gene symbol?: nnrD
  • synonym:
  • product: NAD(P)H-hydrate dehydratase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS00055 [old locus tag: SACOL0007 ]
  • symbol: SACOL_RS00055
  • product: NAD(P)H-hydrate dehydratase
  • replicon: chromosome
  • strand: -
  • coordinates: 9782..10594
  • length: 813
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (9782..10594) NCBI
  • BioCyc: SACOL_RS00055 BioCyc
  • MicrobesOnline: see SACOL0007

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGAAACGTTAAATTCTATTAACATTCCTAAGCGTAAAGAAGATTCACATAAAGGTGAT
    TATGGCAAAATTTTATTAATTGGTGGATCTGCTAACTTAGGTGGTGCCATTATGTTAGCG
    GCTCGTGCATGTGTATTTAGCGGTAGTGGTTTAATCACTGTAGCTACACATCCAACAAAT
    CATTCAGCATTACATTCTCGTTGCCCAGAAGCGATGGTTATTGATATTAATGATACGAAA
    ATGTTGACGAAAATGATTGAAATGACTGACAGTATACTAATTGGTCCAGGTCTTGGCGTT
    GATTTCAAAGGAAATAATGCCATTACATTCCTACTACAAAATATACAACCGCATCAAAAT
    TTAATCGTAGACGGCGATGCGATTACAATCTTTAGTAAACTGAAACCGCAATTACCTACA
    TGTCGTGTGATCTTTACACCACACCTCAAAGAATGGGAACGATTAAGTGGTATTCCTATT
    GAGGAACAGACATATGAGCGTAATCGTGAAGCAGTTGATCGTTTAGGTGCAACTGTTGTA
    CTTAAAAAACATGGTACTGAAATTTTCTTTAAAGATGAAGACTTTAAATTGACAATCGGT
    AGCCCAGCAATGGCGACTGGTGGTATGGGCGATACACTTGCTGGTATGATTACAAGCTTT
    GTCGGTCAATTTGATAACTTAAAAGAAGCGGTTATGAGTGCCACATATACACATAGTTTT
    ATTGGCGAAAACCTTGCAAAAGATATGTATGTGGTGCCACCATCAAGACTTATCAATGAA
    ATACCTTACGCAATGAAACAATTAGAAAGTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    813


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS00055 [old locus tag: SACOL0007 ]
  • symbol: SACOL_RS00055
  • description: NAD(P)H-hydrate dehydratase
  • length: 270
  • theoretical pI: 6.5122
  • theoretical MW: 29549
  • GRAVY: -0.0525926

⊟Function[edit | edit source]

  • reaction:
    EC 4.2.1.136?  ExPASy
    ADP-dependent NAD(P)H-hydrate dehydratase ADP + (6S)-6-beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine-dinucleotide = AMP + phosphate + NADH ADP + (6S)-6-beta-hydroxy-1,4,5,6-tetrahydronicotinamide adenine-dinucleotide phosphate = AMP + phosphate + NADPH
  • TIGRFAM:
    Unknown function General YjeF family C-terminal domain (TIGR00196; HMM-score: 185.2)
    and 2 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (TIGR00097; EC 2.7.1.49,2.7.4.7; HMM-score: 28.2)
    Metabolism Energy metabolism Sugars ribokinase (TIGR02152; EC 2.7.1.15; HMM-score: 13.5)
  • TheSEED: see SACOL0007
  • PFAM:
    Ribokinase (CL0118) Carb_kinase; NAD(P)H-hydrate dehydratase (PF01256; HMM-score: 199.6)
    and 1 more
    Phos_pyr_kin; Phosphomethylpyrimidine kinase (PF08543; HMM-score: 32.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mg2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.997
    • Cytoplasmic Membrane Score: 0.0018
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0008
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.175444
    • TAT(Tat/SPI): 0.119201
    • LIPO(Sec/SPII): 0.039132
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • METLNSINIPKRKEDSHKGDYGKILLIGGSANLGGAIMLAARACVFSGSGLITVATHPTNHSALHSRCPEAMVIDINDTKMLTKMIEMTDSILIGPGLGVDFKGNNAITFLLQNIQPHQNLIVDGDAITIFSKLKPQLPTCRVIFTPHLKEWERLSGIPIEEQTYERNREAVDRLGATVVLKKHGTEIFFKDEDFKLTIGSPAMATGGMGDTLAGMITSFVGQFDNLKEAVMSATYTHSFIGENLAKDMYVVPPSRLINEIPYAMKQLES

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL0007
  • protein localization: see SACOL0007
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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