PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus COL
• locus tag: SACOL_RS04915 [old locus tag: SACOL0959 ]
• pan locus tag^?: SAUPAN003058000
• symbol: SACOL_RS04915
• pan gene symbol^?: —
• synonym:
• product: NADH-dependent flavin oxidoreductase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL_RS04915 [old locus tag: SACOL0959 ]
• symbol: SACOL_RS04915
• product: NADH-dependent flavin oxidoreductase
• replicon: chromosome
• strand: +
• coordinates: 959894..961021
• length: 1128
• essential: unknown other strains

⊟Accession numbers

• Location: NC_002951 (959894..961021) NCBI
• BioCyc: SACOL_RS04915 BioCyc
• MicrobesOnline: see SACOL0959

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  1081
  
  ATGAAAAGTAAATACGAACCATTGTTTGATAAAGTAGAATTACCAAATGGAGTAGAGTTG
  AGAAATCGATTTGTGTTAGCCCCTTTAACACATATTTCTTCAAATGATGATGGTACTATT
  TCAGATGTAGAACTTCCTTATATTGAAAAGCGTTCACAAGATGTTGGTATTACAATTAAT
  GCTGCGAGTAATGTGAGTGATGTCGGAAAAGCATTTCCAGGACAGCCATCAATCGCGCAT
  GACAGTAATATTGAAGGACTAAAACGATTAGCTACAGCAATGAAGAAAAACGGTGCCAAA
  GCACTCGTACAAATACATCATGGCGGTGCACAAGCATTGCCTGAATTAACACCTGATGGA
  GACGTCGTAGCACCAAGTCCAATTTCTTTAAAAAGTTTTGGTCAGAAACAAGAACATAGT
  GCTAGAGAAATGACGAATGAAGAGATTGAACAAGCAATCAAGGATTTTGGTGAAGCAACG
  CGACGTGCAATTGAAGCAGGGTTTGATGGTGTTGAAATACATGGCGCGAATCATTACTTA
  ATTCATCAATTTGTATCACCATACTATAATAGAAGAAATGATGTATGGGCAAATCAATAT
  AAATTCCCGGTCGCTGTGATTGAAGAAGTACTTAAAGCGAAAGAAGCGTATGGCAATAAA
  GACTTTATAGTTGGATACAGATTATCTCCAGAGGAAGCGGAGTCTCCAGGAATCACAATG
  GAAATTACAGAGGAACTCGTTAATAAAATTAGCCATATGCCAATCGACTATATTCATGTT
  TCAATGATGGATACGCATGCAACGACACGTGAAGGTAAATACGCTGGACAAGAAAGACTG
  CCTTTAATTCACAAATGGATAAATGGTCGTATGCCACTTATCGGTATTGGTTCAATTTTC
  ACAGCTGACGAAGCTTTAGATGCAGTTGAAAATGTTGGTGTTGACTTAGTAGCCATTGGT
  AGAGAGCTACTACTGGATTATCAATTTGTTGAAAAAATTAAAGATGGACGGGAAGATGAA
  ATTATTAATTACTTTGATCCAGAGAGAGAAGATAATCATCACTTAACTCCTAATTTATGG
  CATCAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  720
  780
  840
  900
  960
  1020
  1080
  1128
  

⊟Protein

⊟General

• locus tag: SACOL_RS04915 [old locus tag: SACOL0959 ]
• symbol: SACOL_RS04915
• description: NADH-dependent flavin oxidoreductase
• length: 375
• theoretical pI: 5.10559
• theoretical MW: 42109.1
• GRAVY: -0.4712

⊟Function

• TIGRFAM:
  mycofactocin system FadH/OYE family oxidoreductase 2 (TIGR03997; EC 1.-.-.-; HMM-score: 123.6)
  and 5 more
  mycofactocin system FadH/OYE family oxidoreductase 1 (TIGR03996; EC 1.-.-.-; HMM-score: 69.8)
  Unknown function General putative TIM-barrel protein, nifR3 family (TIGR00737; HMM-score: 21.1)
  dihydroorotate dehydrogenase family protein (TIGR01037; EC 1.3.-.-; HMM-score: 14.7)
  Metabolism Purines, pyrimidines, nucleosides, and nucleotides Other inosine/xanthosine triphosphatase (TIGR00258; HMM-score: 13.7)
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine thiamine-phosphate diphosphorylase (TIGR00693; EC 2.5.1.3; HMM-score: 11.4)
• TheSEED: see SACOL0959
• PFAM:
  TIM_barrel (CL0036) Oxidored_FMN; NADH:flavin oxidoreductase / NADH oxidase family (PF00724; HMM-score: 242.8)
  and 4 more
  TMP-TENI; Thiamine monophosphate synthase (PF02581; HMM-score: 17.1)
  DHO_dh; Dihydroorotate dehydrogenase (PF01180; HMM-score: 16.8)
  AP_endonuc_2; Xylose isomerase-like TIM barrel (PF01261; HMM-score: 15.1)
  Dus; Dihydrouridine synthase (Dus) (PF01207; HMM-score: 13.6)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.010402
  • TAT(Tat/SPI): 0.001511
  • LIPO(Sec/SPII): 0.001339
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446760781 NCBI
• RefSeq: WP_000838037 NCBI
• UniProt: see SACOL0959

⊟Protein sequence

• MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSNIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK

⊟Experimental data

• experimentally validated: see SACOL0959
• protein localization: see SACOL0959
• quantitative data / protein copy number per cell: see SACOL0959
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: see SACOL0959

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications