From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS05670 [old locus tag: SACOL1110 ]
  • pan locus tag?: SAUPAN003325000
  • symbol: SACOL_RS05670
  • pan gene symbol?: potC
  • synonym:
  • product: spermidine/putrescine ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS05670 [old locus tag: SACOL1110 ]
  • symbol: SACOL_RS05670
  • product: spermidine/putrescine ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 1119985..1120794
  • length: 810
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1119985..1120794) NCBI
  • BioCyc: SACOL_RS05670 BioCyc
  • MicrobesOnline: see SACOL1110

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAATGGTATGGAAAGCTGTATATCGGGATACTTTTAGCGATTTTATACATCCCAATA
    TTCTTTTTAATGTTCTATTCATTCAATTCGGCTGGTAATATGATTCACTTTGAACATTTT
    ACATTAGAGCATTATCAATCATTATTTCAAAATGATCATTTAATGTCGGTCATTTTTAAT
    ACGATAGCTGTAGCACTTTTAGCAGCCTCAATTTCTACAGTTATTGGTACATTTGGTGCC
    ATTGCTATTTATTATTTAAGAAATAAAAAGTTTAAAGTAACTTTACTAACATTGAATAAT
    GTCTTGATGGTATCATCCGACGTTGTCATAGGTGCATCATTCTTAATTATGTTTACAACG
    ATTGGCCATTTTACTGGTCTTGGTTTAGGATTTTGGACAGTTCTAATATCTCATATTGCA
    TTTTGCATACCTATAGTTGTGATTATCGTCTTACCACAACTGTATGAAATGAATAATAAT
    ATGTTAAATGCTGCAAGAGATTTAGGAGCGACTGAACCACAATTATTAAGCAACATTATT
    ATTCCTAATATTTTACCTTCTATTATAGGAGGATTCTTTATGGCTTTAACTTATTCACTA
    GACGATTTCACAGTAAGTTTCTTCGTTACTGGTAATGGCTTTAGTGTGTTATCAGTTGAA
    GTTTATGCTATGGCGAGAAAAGGAATTAGTATGGAAATTAATGCGATTTCAACATTATTG
    TTTGCTGTTATTGTATTAGGAATACTAGGATATTATTTGATTCAATACGTGATAAATAAG
    AAAAAACTAATCAAGCGAGGTGTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    810

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS05670 [old locus tag: SACOL1110 ]
  • symbol: SACOL_RS05670
  • description: spermidine/putrescine ABC transporter permease
  • length: 269
  • theoretical pI: 9.33859
  • theoretical MW: 30002.7
  • GRAVY: 0.904089

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 53.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 48.2)
    2-aminoethylphosphonate ABC transporter, permease protein (TIGR03226; HMM-score: 45.8)
    2-aminoethylphosphonate ABC transport system, membrane component PhnV (TIGR03255; HMM-score: 44.8)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein (TIGR00969; HMM-score: 43.6)
    and 6 more
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 38.8)
    NifC-like ABC-type porter (TIGR01581; HMM-score: 31.4)
    choline ABC transporter, permease protein (TIGR03416; HMM-score: 30.5)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 27.8)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstC (TIGR02138; HMM-score: 26.1)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, permease protein CysW (TIGR02140; HMM-score: 25.2)
  • TheSEED: see SACOL1110
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 64.5)
    and 1 more
    no clan defined DUF4293; Domain of unknown function (DUF4293) (PF14126; HMM-score: 8.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.067434
    • TAT(Tat/SPI): 0.000372
    • LIPO(Sec/SPII): 0.008788
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFNTIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTTIGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNIIIPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLLFAVIVLGILGYYLIQYVINKKKLIKRGVK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: see SACOL1110
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS05670&oldid=99704"