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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07210 [old locus tag: SACOL1417 ]
  • pan locus tag?: SAUPAN003787000
  • symbol: SACOL_RS07210
  • pan gene symbol?: nikB
  • synonym: opp2B
  • product: peptide ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS07210 [old locus tag: SACOL1417 ]
  • symbol: SACOL_RS07210
  • product: peptide ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1427761..1428747
  • length: 987
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1427761..1428747) NCBI
  • BioCyc: SACOL_RS07210 BioCyc
  • MicrobesOnline: see SACOL1417

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTTCATAATAAAGTCTATGTTGTATAGACTGATGCAAATGATAGTTGTTTTATTTGTT
    ATTTCTACACTTACATTCATTTTAATGAAATTATCACCAGGCAATCCTGTTGATAAAATA
    TTACATCTTGATGTAGCACAAGTGTCGACGGAACAAATAAATGCAACCAAAGATAAATTG
    GGATTAAATGATTCTTTATTGGTACAGTGGTGGCATTGGATGAATCATTTATTACATTTT
    AATTTAGGAAAAAGTTTTGAATCAAAAGAACCGGTAACACAGATATTATTCAACTATGCA
    CCCATAACATTACTCATATCATTTTCAACATTAGTAGTGTCGTTATGCATATCTATACCG
    CTCGGCATTATAGCAGCCAAACGATTTCATAAGTGGACGGATAAAGTGATTAGAGTGATC
    TCAACACTATCGATTAGTTTACCAGCGTTCTTTATCGGTATTATTTTATTATTTATTGTC
    ACAAATTTAATGAATATAGATAGCGTTATACTAAGTCAGTTTATATTACCTGTAATCACG
    CTATCTTTAGGTATGTGTGCATACATCATTCGTTTAGTGCGTTCTAATTTATTGATGTTA
    TTGCAAAGTAATATCGTACAAGCATCAAGATTACGCGGTATGAATGAACGTTATATTTTA
    ATTCATGATTTACTAAAACCAACAATTTTGCCGATTATCCCATTACTAGGGATTTCACTG
    GGCAGTCTAATAGGTGGTACTGTAGTGATTGAAAATTTATTTGATATACCTGGTATTGGT
    TATCTATTAATGGATAGTATTAAATCTCGAGATTATCCTGTTATTCAAGGATGCGTGTTA
    TTTATTGGCTTCTTCGTTGTTATTATCAATACGATTGCTGATTTATTAACGTTATTACTT
    GATCCGAAGCAGCGTTTACAATTAGGAAATCCAAAAATCAAAACCAATACACCATTGATA
    TCAGAAAGTAGTGACCGTCATGCATAA
    60
    120
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    360
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    660
    720
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    840
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    960
    987

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS07210 [old locus tag: SACOL1417 ]
  • symbol: SACOL_RS07210
  • description: peptide ABC transporter permease
  • length: 328
  • theoretical pI: 9.77112
  • theoretical MW: 36814.1
  • GRAVY: 0.745122

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 227.4)
    and 3 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 27.2)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 24.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 18.8)
  • TheSEED: see SACOL1417
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 137.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.146125
    • TAT(Tat/SPI): 0.001088
    • LIPO(Sec/SPII): 0.016699
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKIKTNTPLISESSDRHA

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1417
  • protein localization: see SACOL1417
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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