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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS07220 [old locus tag: SACOL1418 ]
- pan locus tag?: SAUPAN003789000
- symbol: SACOL_RS07220
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS07220 [old locus tag: SACOL1418 ]
- symbol: SACOL_RS07220
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1429051..1429395
- length: 345
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGACATTATTCGATATGCCTAATTATTTATGGATCACAACATTAATAATGATTTTATTA
ACAATATTCTGTTGCTTAGTTTTAAATAAATGGTTTGTATCTGCAGTAATTACATTTGTT
ATATTAGGTGTGCTTGCATTTTTTATTCCAAATTTTCAAGATATAAAATATCAACCATTA
TTAGGATACGCTGCATTTTTAGCGATTATGAGTTTATTAATTAGTTTTCTATTATGGTAT
TTTACTAGAAATTGGCGTAAAGAAAGAAAAGCGCGTAAATTAGAAAAGCAAATTGAAAAA
TACGGCTATGAGGGCGCTGAACTTCGCCGTAAAGATAAAAAATAA60
120
180
240
300
345
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS07220 [old locus tag: SACOL1418 ]
- symbol: SACOL_RS07220
- description: hypothetical protein
- length: 114
- theoretical pI: 10.156
- theoretical MW: 13657.4
- GRAVY: 0.431579
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Pathogenesis type VI secretion protein IcmF (TIGR03348; HMM-score: 14.7)and 3 moreexopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 11.4)Transport and binding proteins Unknown substrate AspT/YidE/YbjL antiporter duplication domain (TIGR01625; HMM-score: 11)Protein fate Protein and peptide secretion and trafficking preprotein translocase, YajC subunit (TIGR00739; HMM-score: 9.1)
- TheSEED: see SACOL1418
- PFAM: NfeD-like (CL0252) NfeD; NfeD-like C-terminal, partner-binding (PF01957; HMM-score: 20.8)and 22 moreMviN_MATE (CL0222) Polysacc_synt; Polysaccharide biosynthesis protein (PF01943; HMM-score: 16.3)no clan defined TMEM238; TMEM238 protein family (PF15125; HMM-score: 15.7)DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 14.3)APC (CL0062) K_trans; K+ potassium transporter (PF02705; HMM-score: 14.1)LysE (CL0292) NicO; High-affinity nickel-transport protein (PF03824; HMM-score: 13.6)no clan defined DUF4381; Domain of unknown function (DUF4381) (PF14316; HMM-score: 13.4)LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 13.3)MENTAL; Cholesterol-capturing domain (PF10457; HMM-score: 12.8)PRA1; PRA1 family protein (PF03208; HMM-score: 12.5)TNF_receptor (CL0607) stn_TNFRSF12A; Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain (PF12191; HMM-score: 12.3)no clan defined DUF3149; Protein of unknown function (DUF3149) (PF11346; HMM-score: 11)DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 10.2)NADP_Rossmann (CL0063) CoA_binding_3; CoA-binding domain (PF13727; HMM-score: 9.6)no clan defined Tweety; Tweety (PF04906; HMM-score: 9)DUF3329; Domain of unknown function (DUF3329) (PF11808; HMM-score: 8.9)Halogen_Hydrol; 5-bromo-4-chloroindolyl phosphate hydrolysis protein (PF10112; HMM-score: 8.3)OAD_gamma; Oxaloacetate decarboxylase, gamma chain (PF04277; HMM-score: 8)E1-E2_ATPase; E1-E2 ATPase (PF00122; HMM-score: 7.2)Sigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 7.1)SieB; Super-infection exclusion protein B (PF14163; HMM-score: 6.9)Vpu; Vpu protein (PF00558; HMM-score: 6.3)GT-C (CL0111) YfhO; Bacterial membrane protein YfhO (PF09586; HMM-score: 5.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001183
- TAT(Tat/SPI): 0.000187
- LIPO(Sec/SPII): 0.145513
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTLFDMPNYLWITTLIMILLTIFCCLVLNKWFVSAVITFVILGVLAFFIPNFQDIKYQPLLGYAAFLAIMSLLISFLLWYFTRNWRKERKARKLEKQIEKYGYEGAELRRKDKK
⊟Experimental data[edit | edit source]
- experimentally validated: see SACOL1418
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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