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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08275 [old locus tag: SACOL1623 ]
  • pan locus tag?: SAUPAN004147000
  • symbol: SACOL_RS08275
  • pan gene symbol?: recO
  • synonym:
  • product: DNA repair protein RecO

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08275 [old locus tag: SACOL1623 ]
  • symbol: SACOL_RS08275
  • product: DNA repair protein RecO
  • replicon: chromosome
  • strand: -
  • coordinates: 1654977..1655723
  • length: 747
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1654977..1655723) NCBI
  • BioCyc: SACOL_RS08275 BioCyc
  • MicrobesOnline: see SACOL1623

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCGCCAAAAAGGGATTATCATCAAAGCAGTTGATTATGGTGAATCTGATAAAATTATC
    ACGATTTTAAATGAGCATGGTGCAAAAGTACCACTTATGGCAAGGCGTGCTAAAAAAGTT
    AAGACGGGTTTACAAGCGCAAACGCAATTGTTTGTTTATGGTTTGTTTATTTACAATCAG
    TGGCGAGGTATGGGAACGTTAAATTCTGTAGATGTTATTAGTCAACATTATAAATTACAA
    ATGGACCTTTACGTAAGCAGTTATGCCGCTCTGGCAGCTGAAACTATTGAGCGCTCAATG
    GATGAAGGTGACATTGCACCATATAACTATCAATTATTACAATTTGTTCTTGAAAAAATA
    GAATCAGGTACATCTGCACAGTTAATGTCAGTCGTAGTTATGTTAAAGTGCATGAAACGA
    TTTGGTTTTACTGCATCATTTAATCGCTGTGCTGTGAGTGGTAATGACACACAAGCAGAT
    TTAATAGGTTATAGTTTTAAGTTTGACGGTGCGATTTCAAGGCAAGAGGCTTCTAAAGAT
    GTACATGCAGTTATATTATCGAATAAAACACTATATTTATTAGATGTATTACAAAAATTA
    CCGATAGATAAAATGAATTCATTGAATATCCATCAAGAAATTATTGATGAAATGTCAGAT
    ATCATTTTAATGTTATATCGTGAATATGCAGGTATGTTTTTTAAAAGTCAGAAACTAATC
    AACCAATTAAAAAGATTGGAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    747

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08275 [old locus tag: SACOL1623 ]
  • symbol: SACOL_RS08275
  • description: DNA repair protein RecO
  • length: 248
  • theoretical pI: 8.89118
  • theoretical MW: 28205.7
  • GRAVY: -0.0673387

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein RecO (TIGR00613; HMM-score: 259.7)
  • TheSEED: see SACOL1623
  • PFAM:
    Zn_Beta_Ribbon (CL0167) RecO_C; Recombination protein O C terminal (PF02565; HMM-score: 90.4)
    and 2 more
    OB (CL0021) RecO_N; Recombination protein O N terminal (PF11967; HMM-score: 58)
    RecO_N_2; RecO N terminal (PF13114; HMM-score: 25)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007189
    • TAT(Tat/SPI): 0.001369
    • LIPO(Sec/SPII): 0.001218
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLINQLKRLEQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL1623
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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