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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08960 [old locus tag: SACOL1751 ]
  • pan locus tag?: SAUPAN004352000
  • symbol: SACOL_RS08960
  • pan gene symbol?: pde2
  • synonym: nrnA
  • product: bifunctional oligoribonuclease/PAP phosphatase NrnA

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08960 [old locus tag: SACOL1751 ]
  • symbol: SACOL_RS08960
  • product: bifunctional oligoribonuclease/PAP phosphatase NrnA
  • replicon: chromosome
  • strand: -
  • coordinates: 1791835..1792776
  • length: 942
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1791835..1792776) NCBI
  • BioCyc: SACOL_RS08960 BioCyc
  • MicrobesOnline: see SACOL1751

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGATTAGTACTTTGAATGAAATTATGAAATGTATCGAAGACAACGATACAATTATTATA
    CACAGACATGTTAGACCAGATCCTGATGCATATGGTTCACAACTTGGTTTAAAATACTAT
    ATTCAGCAGAAATTTCCGCAAAAGCAAGTATTTGCAGTGGGTGAAGCGGAATCATCATTA
    AGTTTTATTGGAGAGTTAGATAACATTGATGATAAAACATATCAAGATGCGCTTGTAATT
    GTATGTGATACTGCCAATGCTCCACGAATTGACGATGAACGTTATAGTACAGGTCGTAAA
    CTTATTAAAATAGATCATCATCCTGCAGTTGATCAGTATGGTGATATTAATTTAGTTAAT
    ACGAACGCGTCATCTACAAGTGAAATCATTTACGATTTAATCTCACATTTTAATGATGAA
    GCAATTGTTAATAAAGATATCGCGAGCGTTTTATATCTTGGTATCGTCGGTGATACTGGG
    CGATTCCTTTTTAACAATACCTCAGAACATACTATGGAAATTGCTGGAAAGTTAATTGGG
    CATGATATTGATCATAATGCGCTTTTAAATAAAATGATGGAGAAGGACCCAAAAATGTTG
    CCGTTTCAAGGTTATGTTTTACAACATTTCGAACTTATGGATGATGGATTCTGCCAAGTT
    AAAATAACTGAAGATGTATTGGAGCAATTCGGTATTCAGCCAAATGAAGCATCTCAGTTT
    GTTAATACAATTGCTGACATCAAAGGCTTGAAAATATGGGTATTTGCAGTCGATGAAGGT
    AATGAAATCAGATGTCGATTACGTTCTAAAGGGCAATTGATTATTAATGATATTGCGCAA
    GATTTTGGTGGCGGTGGTCATCCGAATGCGTCAGGAGTTTCAGTGGACAGCTGGGATGAA
    TTTGAGCAACTTGCTACAGCTTTACGCACAAAACTTAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    942

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08960 [old locus tag: SACOL1751 ]
  • symbol: SACOL_RS08960
  • description: bifunctional oligoribonuclease/PAP phosphatase NrnA
  • length: 313
  • theoretical pI: 4.47326
  • theoretical MW: 35096.3
  • GRAVY: -0.27508

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan glutamate racemase (TIGR00067; EC 5.1.1.3; HMM-score: 12.3)
  • TheSEED: see SACOL1751
  • PFAM:
    HAD (CL0137) DHH; DHH family (PF01368; HMM-score: 53.8)
    no clan defined DHHA1; DHHA1 domain (PF02272; HMM-score: 45.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003663
    • TAT(Tat/SPI): 0.00018
    • LIPO(Sec/SPII): 0.000907
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGNEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1751
  • protein localization: see SACOL1751
  • quantitative data / protein copy number per cell: see SACOL1751
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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