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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS09630 [old locus tag: SACOL1877 ]
- pan locus tag?: SAUPAN004584000
- symbol: SACOL_RS09630
- pan gene symbol?: epiB
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS09630 [old locus tag: SACOL1877 ]
- symbol: SACOL_RS09630
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1928827..1931820
- length: 2994
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
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2761
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2881
2941ATGAACACTATTTACGAACCGTCAAGTATTTGTATGATTAGAACACCTTTATTATCAGTT
GAATTTTTCAATTTATTTTTAAATACTGAACAAATTAAATATAGCGACTTACAATTAAAT
GCTCAGATGAAAGAATCAATCCTAACAACAACATTTAACTTATATTGTACTTTACAAGAA
ATAAATTTTGATGGCGATAACAAGAAGGTTAGAGATGCTAAAGAAAGTTTATTAAAATAT
TTAATTAGAATGTCAACACGTCCAACTCCATTTGGATTATTAAGTGGTATTAATTTGGGG
CATTTTGTAAATGAACCAACACGTCTTAAAGTTGGAAATAGTATTCAAAAATATGTGAAA
GTCGATGGCGAATGGTTGTATAAACTGGTTAGTTATATTGAGAGTATTGATGAATATTAT
CAAAATTTGAAAGTTATTTGGAATAGTAAAGCACATATTATCAATGATCGAATATATTTA
AATGAACAAAGTGCTATTTATTTAAACAACAATAAAGATACATCTTTTTCCATTAAAAAT
AGCGAATTACTCGTATTCATCAAAACCACTGTGACGAATAATAATATTACTTTTTCAAAT
TTAGCTGAAAAGATAAATCAAGAATTTGAAATTAATGATATTACTAAAGTGAAAGTATAT
ATCCATAATCTTGTCTCAAAGGAAATTATATATTCAACAATCAGACCACCGTTATCATAT
AGCGATAATTTAAATTATATTTTAAATAAACTTTCTTTACATAATGATGATTTTGTGAAA
AAAATTAGAGAAATCCAGAAATTGATATTAGCTTATGAAAAAACTGAAATTGGATTTGGC
GAGGAATTATATAAAGACATTATTCATCATATGAAGGCACTATTCAAATGTAAAAACTAT
CTTCAAATTGATACCAAAATTGACATGATTAACAATTATTTACATCAAGATATAGCAACA
AATATATCTGAAGCAGCGTACTTATTGTGGCTTTTATCAAGAAATAATATTGGATTCACA
GATTTGAAAGTTCTTCACAACCGTTTTATTGAAAAGTATGGATTTGAACAACTCGTGAAT
ATTAAAGATTTGATTTCAGATATAACAGGTTTCGGGACAACAATTTTTCAAGAAGAAGAA
ACCGATGGAAATAATATTGTAATGCTTAAGCAAAAATTTTTACATGCCTTGAGAAATAAC
GATGAGATAGTCATAAATGAAAAAGATGTAGAGTCATTGATTAACGATAATGAAATCAAT
CATTATCATGCGCCAATGAGTGCAGATGTTTATGCTGAACTTTATTTAGGACGTTTTTAC
AATCAGTACAATGAGCTCATTGTTATTAGTCCTTTAACGGCGTCTTTTAATGCTGGCGCT
ACATTTGGGCGATTTCATCATTTAATTGATACTGAAACTTTAGCAAAATTAGAACATGAA
AAAGGACATTATTATCAGAAGATGATATGTGATGACAATGTAGAAATGATTTCTATAAAT
AACATACCGAAATATCCGAGAAATCATAATGTATTAACTAATCATGACTCATACGAATAT
TCATTGAATTTAGGAAGTAGTAATAGTTATTCAAAGTATGAGCTTACCTTAGATGATATT
TATGTTGGTGCTACCTTTAACAAATTATATTTATATTCTAGCCAACTAAATAAAAGGGTA
ATATTTGAATCAAACAATATGTATAACTTTTTAAAAGAATGTAATTTATATCGATTGTTA
CGAGAAATTTCAATGGAATCTGTGAAATGCATTGAACCTATGAATGATGTGAGTATTGAT
TCATTTAGTTATTCACCACGAATCAGATATAAAAATGTCATTCTTAAACCAGCATATTGG
AAAATTAACGAGATGGTATTACCTTTACCTAAAAATGAAGAATGGGATCAACAATTTTTG
AAATATCAAGAACAATTCAATATACCTAATATCGTGAATTTAGTTTATGGAGATAACAAG
CTTCTACTAAATTTATCATTAGCTAATCATAGATATTTATTGATGAAAGAATATAAGAAG
CATAAACGTGTACGTTTAGTAGAATCATTTTTACCTCAATCAAAGAATGATCATGTGTAT
GAAATTGTTACACCAATTTATAAAAAATCATCTTATCGAGGACCCGAAATCGAAATTCCA
AAATATAAAAATACAGATATTGAATATGACAAAGACTGGTTTGCATTACATATTCATATC
GATAAGCCATCGCAAGATACATTTATCATCGACAATTTGTATCCATTTGTAAAACATCTT
AAAGATAAGGGAGATATAGATCAATATTTTTTAATGCGTTATATCAAACAAGGTGACATT
TTAAAGTTGAGGTTATTCAGGAATGACGAAAATTACGCAGAAATATACAGCATCTTGAAG
AATTGGTTACCACATGTTCGACAAACGACAGAAGTTTCAGATTATGAATTTGTATCATAC
GAGCCAGAATTTTTTAGATATGGTGGAAAGAACACGATTAATGAAATAGAAGCCTTCTTT
GAATATGACACGAATTTAGCTGTCAATATTATTGAAAATGATTTTAAGTTTGATCGACCA
TATATTGTTGCTATTTCAATAATGTATTTATTTGAGATGTTTTCAATTTCTAATGAAGAG
CGTATGGAAATTGTTAATAACTATGTACCTACATCATTTAAAAGTAAAGATATTAGACCT
TTTAAAAATGAACTTGTAACTATATGTAATCCTGCTAATAATTTTGAATATATGGCTAAA
CACTATAGTGGTATTTATCGAATTTTAAAAGATGGCAACCAAATTTTGAGCAAATTAAAT
GAAGGGCTTAAAAAAACTTTAACTACTAAAAGGTCAAGGATTATTGGCAGCTTAATTCAT
ATGCGCTGCAATCGAATATTTGGCATTGATAAGGATCAAGAAACATTTGTTTTATCTATT
GTAAAAGAAATTGTTAAAACTCAAAAGCATTGGTGTGGTGACAAAAATGATTGA60
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2994
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS09630 [old locus tag: SACOL1877 ]
- symbol: SACOL_RS09630
- description: hypothetical protein
- length: 997
- theoretical pI: 6.73397
- theoretical MW: 117635
- GRAVY: -0.404514
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Toxin production and resistance thiopeptide-type bacteriocin biosynthesis domain (TIGR03891; HMM-score: 204.6)
- TheSEED: see SACOL1877
- PFAM: no clan defined Lant_dehydr_N; Lantibiotic dehydratase, C terminus (PF04738; HMM-score: 505.2)and 1 moreLant_dehydr_C; Lantibiotic biosynthesis dehydratase C-term (PF14028; HMM-score: 85)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.05
- Cytoplasmic Membrane Score: 8.78
- Cellwall Score: 0.08
- Extracellular Score: 0.09
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015967
- TAT(Tat/SPI): 0.000255
- LIPO(Sec/SPII): 0.002157
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNTIYEPSSICMIRTPLLSVEFFNLFLNTEQIKYSDLQLNAQMKESILTTTFNLYCTLQEINFDGDNKKVRDAKESLLKYLIRMSTRPTPFGLLSGINLGHFVNEPTRLKVGNSIQKYVKVDGEWLYKLVSYIESIDEYYQNLKVIWNSKAHIINDRIYLNEQSAIYLNNNKDTSFSIKNSELLVFIKTTVTNNNITFSNLAEKINQEFEINDITKVKVYIHNLVSKEIIYSTIRPPLSYSDNLNYILNKLSLHNDDFVKKIREIQKLILAYEKTEIGFGEELYKDIIHHMKALFKCKNYLQIDTKIDMINNYLHQDIATNISEAAYLLWLLSRNNIGFTDLKVLHNRFIEKYGFEQLVNIKDLISDITGFGTTIFQEEETDGNNIVMLKQKFLHALRNNDEIVINEKDVESLINDNEINHYHAPMSADVYAELYLGRFYNQYNELIVISPLTASFNAGATFGRFHHLIDTETLAKLEHEKGHYYQKMICDDNVEMISINNIPKYPRNHNVLTNHDSYEYSLNLGSSNSYSKYELTLDDIYVGATFNKLYLYSSQLNKRVIFESNNMYNFLKECNLYRLLREISMESVKCIEPMNDVSIDSFSYSPRIRYKNVILKPAYWKINEMVLPLPKNEEWDQQFLKYQEQFNIPNIVNLVYGDNKLLLNLSLANHRYLLMKEYKKHKRVRLVESFLPQSKNDHVYEIVTPIYKKSSYRGPEIEIPKYKNTDIEYDKDWFALHIHIDKPSQDTFIIDNLYPFVKHLKDKGDIDQYFLMRYIKQGDILKLRLFRNDENYAEIYSILKNWLPHVRQTTEVSDYEFVSYEPEFFRYGGKNTINEIEAFFEYDTNLAVNIIENDFKFDRPYIVAISIMYLFEMFSISNEERMEIVNNYVPTSFKSKDIRPFKNELVTICNPANNFEYMAKHYSGIYRILKDGNQILSKLNEGLKKTLTTKRSRIIGSLIHMRCNRIFGIDKDQETFVLSIVKEIVKTQKHWCGDKND
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: see SACOL1877
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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