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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11950 [old locus tag: SACOL2273 ]
  • pan locus tag?: SAUPAN005741000
  • symbol: SACOL_RS11950
  • pan gene symbol?: fdhD
  • synonym:
  • product: sulfurtransferase FdhD

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS11950 [old locus tag: SACOL2273 ]
  • symbol: SACOL_RS11950
  • product: sulfurtransferase FdhD
  • replicon: chromosome
  • strand: +
  • coordinates: 2334112..2334909
  • length: 798
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2334112..2334909) NCBI
  • BioCyc: SACOL_RS11950 BioCyc
  • MicrobesOnline: see SACOL2273

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAACAAAGATGTATCTTTAGGTCAACCAATTGTTAGATATGAAGATGGAAAATTATTC
    AATACAACAGATCAATATGTGACAGAATTTCCACTTACAATTATGGTGAATGGTGAAGAA
    TTTGCGACTGTTATATGCAGTCCAACAAACCTTGAGGAGTTAGTCATTGGATTTCTGGCT
    TCGGAAGGTGCCATTTTAAAGCGAGATGAATTAAAATCTGTACTGATTGATGATAGTAAA
    GGTTTTGCCCATGTTGAACTTAATAAAGATTTAGGCGATCGCTTTCAATATTCCACAAAA
    CGAATGATTGCATCTTGTTGCGGAAAGAGTCGTGAGTTTTATTTTCAAAATGATGCTGCT
    ATCGCTAAAACATCTATGTCTAAAATCACTTTAACTCCAATGCAAATTATTAACATGATG
    ACTCGATTACAAAGTGCAAGTCATATTTACCAAGAAACAGGTGGCTTACATAATGCTGCT
    ATAAGCGATGGTTTGACATTTTTTGTACATCGACAAGACATTGGTAGACATAACGCTCTA
    GATAAATTATATGGATTTTGTATTCAGCGACATATTACTGTCCGAGATAAAGTATTAATT
    TTTAGTGGACGTATTTCATCAGAAATTTTAATTAAAGCCGCAAAAATTGGTGTTGGCGTC
    ATTTTATCTAAATCAGCTCCGACAACGCTTGCTGTAACCTTAGCTAATGACCTAAATATT
    ACGGCAGTTGGATTTATTCGAAATGGTGGCTTTAATATATACAGTCATCCAGAACGTATC
    ATTGATTCTGAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    798

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS11950 [old locus tag: SACOL2273 ]
  • symbol: SACOL_RS11950
  • description: sulfurtransferase FdhD
  • length: 265
  • theoretical pI: 7.17929
  • theoretical MW: 29415.6
  • GRAVY: -0.0358491

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Anaerobic formate dehydrogenase family accessory protein FdhD (TIGR00129; HMM-score: 240.6)
    Metabolism Energy metabolism Electron transport formate dehydrogenase family accessory protein FdhD (TIGR00129; HMM-score: 240.6)
  • TheSEED: see SACOL2273
  • PFAM:
    CDA (CL0109) FdhD-NarQ; FdhD/NarQ family (PF02634; HMM-score: 241.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003781
    • TAT(Tat/SPI): 0.000142
    • LIPO(Sec/SPII): 0.000277
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKDVSLGQPIVRYEDGKLFNTTDQYVTEFPLTIMVNGEEFATVICSPTNLEELVIGFLASEGAILKRDELKSVLIDDSKGFAHVELNKDLGDRFQYSTKRMIASCCGKSREFYFQNDAAIAKTSMSKITLTPMQIINMMTRLQSASHIYQETGGLHNAAISDGLTFFVHRQDIGRHNALDKLYGFCIQRHITVRDKVLIFSGRISSEILIKAAKIGVGVILSKSAPTTLAVTLANDLNITAVGFIRNGGFNIYSHPERIIDSEQ

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2273
  • protein localization: see SACOL2273
  • quantitative data / protein copy number per cell: see SACOL2273
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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