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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS12400 [old locus tag: SACOL2361 ]
- pan locus tag?: SAUPAN005873000
- symbol: SACOL_RS12400
- pan gene symbol?: —
- synonym:
- product: DUF3021 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS12400 [old locus tag: SACOL2361 ]
- symbol: SACOL_RS12400
- product: DUF3021 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 2419966..2420421
- length: 456
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421ATGAAAAATTTGAAAAACTCATTATTTATTAGCTTAATCATTGGTTTGTCCCTTTCACTG
TTCTTTAGTATGTTATTTGCAGACGGCAAATATTATCCACTGAACCCACAATCAACTATT
GGCATATTGTATTATACGCATTTCACAGAAACTACCGTAATGTTGATTTCTATCATTTTA
TGGTTACTCATAGGCGTCGTCTTTTTCCTTGGAGATTTTATCTTTAAATACACAGATTGG
AGCATTACTAAAGCAACTATAATGCATTTCATAACAACGTATGTCGGATTCTTGCCTTTA
GCAATGCTTGCCGGTTGGTTTCCACTAACAGTGCATTATCTAATCATATTCACAATTATC
TTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTA
GACACTATTAACAAGCAACTGAAACAATTAAAATGA60
120
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456
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS12400 [old locus tag: SACOL2361 ]
- symbol: SACOL_RS12400
- description: DUF3021 domain-containing protein
- length: 151
- theoretical pI: 9.82185
- theoretical MW: 17676.2
- GRAVY: 0.93245
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Pathogenesis type VI secretion protein IcmF (TIGR03348; HMM-score: 9)Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan stage V sporulation protein D (TIGR02214; HMM-score: 7.3)Cellular processes Sporulation and germination stage V sporulation protein D (TIGR02214; HMM-score: 7.3)
- TheSEED: see SACOL2361
- PFAM: no clan defined DUF3021; Protein of unknown function (DUF3021) (PF11457; HMM-score: 119.1)and 4 moreDUF4271; Domain of unknown function (DUF4271) (PF14093; HMM-score: 16.6)DUF4381; Domain of unknown function (DUF4381) (PF14316; HMM-score: 13.1)AsmA-like (CL0401) AsmA; AsmA family (PF05170; HMM-score: 10.8)no clan defined Holin_SPP1; SPP1 phage holin (PF04688; HMM-score: 10.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.149266
- TAT(Tat/SPI): 0.002029
- LIPO(Sec/SPII): 0.14288
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKNLKNSLFISLIIGLSLSLFFSMLFADGKYYPLNPQSTIGILYYTHFTETTVMLISIILWLLIGVVFFLGDFIFKYTDWSITKATIMHFITTYVGFLPLAMLAGWFPLTVHYLIIFTIIFIVVYVLIWIIQFFKNKNYVDTINKQLKQLK
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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