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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12400 [old locus tag: SACOL2361 ]
  • pan locus tag?: SAUPAN005873000
  • symbol: SACOL_RS12400
  • pan gene symbol?: —
  • synonym:
  • product: DUF3021 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS12400 [old locus tag: SACOL2361 ]
  • symbol: SACOL_RS12400
  • product: DUF3021 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2419966..2420421
  • length: 456
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2419966..2420421) NCBI
  • BioCyc: SACOL_RS12400 BioCyc
  • MicrobesOnline: see SACOL2361

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAAAATTTGAAAAACTCATTATTTATTAGCTTAATCATTGGTTTGTCCCTTTCACTG
    TTCTTTAGTATGTTATTTGCAGACGGCAAATATTATCCACTGAACCCACAATCAACTATT
    GGCATATTGTATTATACGCATTTCACAGAAACTACCGTAATGTTGATTTCTATCATTTTA
    TGGTTACTCATAGGCGTCGTCTTTTTCCTTGGAGATTTTATCTTTAAATACACAGATTGG
    AGCATTACTAAAGCAACTATAATGCATTTCATAACAACGTATGTCGGATTCTTGCCTTTA
    GCAATGCTTGCCGGTTGGTTTCCACTAACAGTGCATTATCTAATCATATTCACAATTATC
    TTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTA
    GACACTATTAACAAGCAACTGAAACAATTAAAATGA
    60
    120
    180
    240
    300
    360
    420
    456

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS12400 [old locus tag: SACOL2361 ]
  • symbol: SACOL_RS12400
  • description: DUF3021 domain-containing protein
  • length: 151
  • theoretical pI: 9.82185
  • theoretical MW: 17676.2
  • GRAVY: 0.93245

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis type VI secretion protein IcmF (TIGR03348; HMM-score: 9)
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan stage V sporulation protein D (TIGR02214; HMM-score: 7.3)
    Cellular processes Cellular processes Sporulation and germination stage V sporulation protein D (TIGR02214; HMM-score: 7.3)
  • TheSEED: see SACOL2361
  • PFAM:
    no clan defined DUF3021; Protein of unknown function (DUF3021) (PF11457; HMM-score: 119.1)
    and 4 more
    DUF4271; Domain of unknown function (DUF4271) (PF14093; HMM-score: 16.6)
    DUF4381; Domain of unknown function (DUF4381) (PF14316; HMM-score: 13.1)
    AsmA-like (CL0401) AsmA; AsmA family (PF05170; HMM-score: 10.8)
    no clan defined Holin_SPP1; SPP1 phage holin (PF04688; HMM-score: 10.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.149266
    • TAT(Tat/SPI): 0.002029
    • LIPO(Sec/SPII): 0.14288
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKNLKNSLFISLIIGLSLSLFFSMLFADGKYYPLNPQSTIGILYYTHFTETTVMLISIILWLLIGVVFFLGDFIFKYTDWSITKATIMHFITTYVGFLPLAMLAGWFPLTVHYLIIFTIIFIVVYVLIWIIQFFKNKNYVDTINKQLKQLK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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