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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS13575 [old locus tag: SACOL2592 ]
  • pan locus tag?: SAUPAN006251000
  • symbol: SACOL_RS13575
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS13575 [old locus tag: SACOL2592 ]
  • symbol: SACOL_RS13575
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2654627..2654926
  • length: 300
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2654627..2654926) NCBI
  • BioCyc: SACOL_RS13575 BioCyc
  • MicrobesOnline: see SACOL2592

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGTCTTTAAATAAAGAGCAAAGACGCATCACAGCTGAAGAGTTGCAAGCACATTTCGAA
    GCATCTACCTTATCGGTTCAAATGATTGCTGAAAAACTGAATGTCACTACAGAAGATGTG
    GAAAAAGTATTAGCTATGACAGCGCCACTAGGCATTTTTAGTCATCAATTACAACGATTT
    ATTCATTTAGTATGGGATGTCAGAGATGTAATAAACGACAATATTAAAGGAAATGGACAA
    ACACCAGAACCATATACGTATTTAAAAGGTGAAAAAGAGGACTATTGGTTTTTAAGATAA
    60
    120
    180
    240
    300


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS13575 [old locus tag: SACOL2592 ]
  • symbol: SACOL_RS13575
  • description: hypothetical protein
  • length: 99
  • theoretical pI: 5.14368
  • theoretical MW: 11536
  • GRAVY: -0.450505

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage-associated protein, BcepMu gp16 family (TIGR04111; HMM-score: 18.7)
  • TheSEED: see SACOL2592
  • PFAM:
    HTH (CL0123) DUF2316; Uncharacterized protein conserved in bacteria (DUF2316) (PF10078; HMM-score: 106.7)
    and 6 more
    PCI; PCI domain (PF01399; HMM-score: 17.9)
    HTH_11; HTH domain (PF08279; HMM-score: 14)
    HTH_69; Winged helix-turn-helix domain (PF22979; HMM-score: 13.7)
    HTH_Cmi2_C; Cmi2, C-terminal (PF24270; HMM-score: 13.4)
    IF2_N; Translation initiation factor IF-2, N-terminal region (PF04760; HMM-score: 12.6)
    Sigma70_r3; Sigma-70 region 3 (PF04539; HMM-score: 12.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.958
    • Cytoplasmic Membrane Score: 0.0265
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0154
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00198
    • TAT(Tat/SPI): 0.000666
    • LIPO(Sec/SPII): 0.000384
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSLNKEQRRITAEELQAHFEASTLSVQMIAEKLNVTTEDVEKVLAMTAPLGIFSHQLQRFIHLVWDVRDVINDNIKGNGQTPEPYTYLKGEKEDYWFLR

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL2592
  • protein localization: see SACOL2592
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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