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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01542
  • pan locus tag?: SAUPAN001768000
  • symbol: SAOUHSC_01542
  • pan gene symbol?: —
  • synonym:
  • product: SNF2 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_01542
  • symbol: SAOUHSC_01542
  • product: SNF2 family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1489041..1490408
  • length: 1368
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    GTGGAACATTTGGCGATTGACTTCAAACCACATAGCTATCAAAAGTATGCAATAGATAAA
    GTTATTGATAATGAGAAATACGGTTTGTTTTTAGATATGGGGCTAGGGAAAACAGTATCA
    ACACTTACAGCATTTAGTGAATTGCAGTTGTTAGACACTAAAAAAATGTTAGTCATAGCA
    CCTAAACAAGTTGCTAAAGATACATGGGTTGATGAAGTTGATAAGTGGAACCATTTAAAT
    CATCTGAAAGTGTCTTTAGTCTTAGGAACACCTAAAGAAAGAAATGATGCATTAAACACA
    GAGGCTGATATCTATGTAACCAATAAAGAAAATACTAAATGGTTATGCGATCAATATAAA
    AAAGAATGGCCATTTGATATGGTTGTAATTGATGAACTGTCTACATTTAAAAGTCCTAAG
    AGTCAAAGGTTTAAATCTATTAAAAAGAAATTACCACTCATTAATAGATTTATAGGATTA
    ACAGGAACACCTAGCCCAAATAGTTTACAGGATTTATGGGCTCAAGTTTATTTGATAGAC
    AGAGGCGAAAGACTTGAGTCTTCATTCAGTCGTTATCGAGAAAGGTACTTTAAACCAACA
    CATCAAGTTAGCGAACATGTTTTTAACTGGGAGCTAAGAGACGGATCTGAAGAAAAGATA
    TATGAACGAATAGAAGATATATGTTTAAGCATGAAAGCGAAAGATTATCTAGATATGCCT
    GACAGAGTTGATACTAAACAAACAGTAGTCTTATCTGAAAAAGAAAGAAAAGTATATGCA
    GAATTAGAAAAAAACTATATTTTAGAATCGGAAGAAGAAGGAACAGTTGTAGCTCAGAAT
    GGGGCATCATTAAGTCAAAAACTACTTCAACTATCTAACGGTGCAGTTTATACAGATGAT
    GAAGATGTAAGACTTATACATGATAAGAAGTTAGATAAGTTAGAGGAAATTATAGAGGAG
    TCTCAAGGCCAACCAATATTATTGTTTTATAACTTCAAACATGATAAAGAAAGAATACTT
    CAAAGGTTTAAGGAAGCAACCACATTAGAGGATTCAAACTATAAAGAACGTTGGAATAGT
    GGAGACATTAAGCTGCTTATAGCACATCCAGCAAGTGCAGGGCATGGATTAAACTTACAA
    CAAGGTGGGCACATTATTGTTTGGTTTGGACTTACATGGTCATTGGAATTATACCAACAA
    GCAAATGCAAGATTATATAGACAAGGACAAAATCATACGACTATTATTCATCACATTATG
    ACCGATAACACAATAGATCAAAGAGTATATAAAGCTTTACAAAATAAAGAACTAACGCAA
    GAAGAATTGATGAAAGCTATTAAAGCAAGAATAGCTAAGCATAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1368

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01542
  • symbol: SAOUHSC_01542
  • description: SNF2 family protein
  • length: 455
  • theoretical pI: 6.80701
  • theoretical MW: 53078.1
  • GRAVY: -0.63011

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • DNA helicase, phage-associated
  • PFAM:
    P-loop_NTPase (CL0023) SNF2_N; SNF2 family N-terminal domain (PF00176; HMM-score: 76.2)
    and 3 more
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 35.6)
    DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 28.5)
    Helicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 21.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003145
    • TAT(Tat/SPI): 0.000215
    • LIPO(Sec/SPII): 0.000225
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIAPKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYKKEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLIDRGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMPDRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDDEDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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