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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001768000
- symbol?: —
- synonym:
- description?: ATP-dependent helicase
- ATP-dependent helicase
- phage helicase
- SNF2 family protein
- phage protein
- SNF2 domain protein
- SNF2 family N-domain protein
- SNF2-related protein
- type III restriction enzyme, res subunit
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2192971..2194957
- synteny block?: BlockID0011670
- occurrence?: in 39% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
C248_0345
11819-97:
MS7_1472
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_13780
JH1:
SaurJH1_1075
JH9:
SaurJH9_1055
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1523
MSHR1132:
—
MSSA476:
SAS0928
Mu3:
—
Mu50:
—
MW2:
MW1405
RF122:
—
ST398:
SAPIG0369
T0131:
—
TCH60:
HMPREF0772_11686
TW20:
—
USA300_TCH1516:
USA300HOU_1456
VC40:
—
⊟Genome Viewer[edit | edit source]
NCTC8325 | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
NCTC8325 MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIA
USA300_FPR3757 --------------------------------MGLGKTVSTLTAFSELQLLDTKKMLVIA
****************************
NCTC8325 PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
USA300_FPR3757 PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
************************************************************
NCTC8325 KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
USA300_FPR3757 KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
************************************************************
NCTC8325 RGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
USA300_FPR3757 RGERLESSFSRYRERYFKPTHQVSEHIFKWELRDGSEEKIYKQIEDICLSMKAKDYLDMP
**************************:*:************::*****************
NCTC8325 DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD
USA300_FPR3757 DRVDTKQTVVLSEKERKVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE
******************* ***************************************:
NCTC8325 EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNS
USA300_FPR3757 EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLDDSNYKERWNS
*************************************************:**********
NCTC8325 GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
USA300_FPR3757 GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
************************************************************
NCTC8325 TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
USA300_FPR3757 TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
***********************************