PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001768000
• symbol^?: —
• synonym:
• description^?: ATP-dependent helicase

  descriptions from strain specific annotations:

  • ATP-dependent helicase
  • phage helicase
  • SNF2 family protein
  • phage protein
  • SNF2 domain protein
  • SNF2 family N-domain protein
  • SNF2-related protein
  • type III restriction enzyme, res subunit
• strand^?: -
• coordinates^?: 2192971..2194957
• synteny block^?: BlockID0011670
• occurrence^?: in 39% of 33 strains

⊟Orthologs

COL:
—
N315:
—
NCTC8325:
SAOUHSC_01542
Newman:
—
USA300_FPR3757:
SAUSA300_1408
04-02981:
—
08BA02176:
C248_0345
11819-97:
MS7_1472
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_13780
JH1:
SaurJH1_1075
JH9:
SaurJH9_1055
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1523
MSHR1132:
—
MSSA476:
SAS0928
Mu3:
—
Mu50:
—
MW2:
MW1405
RF122:
—
ST398:
SAPIG0369
T0131:
—
TCH60:
HMPREF0772_11686
TW20:
—
USA300_TCH1516:
USA300HOU_1456
VC40:
—

⊟Genome Viewer

NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIA
  USA300_FPR3757  --------------------------------MGLGKTVSTLTAFSELQLLDTKKMLVIA
                                                  ****************************
  
  NCTC8325        PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
  USA300_FPR3757  PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
                  ************************************************************
  
  NCTC8325        KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
  USA300_FPR3757  KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
                  ************************************************************
  
  NCTC8325        RGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
  USA300_FPR3757  RGERLESSFSRYRERYFKPTHQVSEHIFKWELRDGSEEKIYKQIEDICLSMKAKDYLDMP
                  **************************:*:************::*****************
  
  NCTC8325        DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD
  USA300_FPR3757  DRVDTKQTVVLSEKERKVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE
                  ******************* ***************************************:
  
  NCTC8325        EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNS
  USA300_FPR3757  EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLDDSNYKERWNS
                  *************************************************:**********
  
  NCTC8325        GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
  USA300_FPR3757  GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
                  ************************************************************
  
  NCTC8325        TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
  USA300_FPR3757  TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
                  ***********************************