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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02664
  • pan locus tag?: SAUPAN005904000
  • symbol: SAOUHSC_02664
  • pan gene symbol?: rsp
  • synonym:
  • product: transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_02664
  • symbol: SAOUHSC_02664
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2448426..2450531
  • length: 2106
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    ATGACATGCCAACTTAAAATACATCATACATTATCGACAATACCAAGTCGTAATATTAAT
    AATATTATGGTGCTATTTTCACTTACAAGTAAACTCAATATTACGATTAATGGTGAAACC
    AAAGACGTAAGTAATTATATTATCTTAATTAACCATGGTGATATTTATAATATTAACCAC
    GGCGAAAATATAATCGAATTAATGATACCCGTTTTTTATTTTTATCAACAAGATGATGAT
    TTCTTTAATGGTTATTTAGATCGTCATTTATTACAATCAAGTAATTATATTAAGTCATTA
    ATTGCCGATTTAATCAGTACACCAACAAGTTCTTCTTTAATGGGGAAAAATATAGGTCAA
    AGTATTATAGACACTTTACTTAAAGAAGCTTTTATAAGAATAGATCATGAATATTTACCA
    AATATTGCTTTAAGCAATCCGGTGTTCATAGACTGTGTAAACTATATTCATGACAATATT
    GATGCGCACTTGTCTTTAAAAGATATAGCGATGCATTGCAACATCTCTGAATCATATTGT
    TCTAATCTTTTTGTTCGATATTTGAGTATGAATTTTAAAGATTATTTTACAAGTATTAAA
    CTTGTTAACGCCATCAATTTATTACTTTCTACAAAACATTCTATTACAACTGTTTCTGAA
    TTGGCCGGTTTTAACAGTCATACAAATTTTGCAAATCAATTTAAGAATTACTTGCATTTT
    AGTCCTAAACAGTTCCGTTCACTCGTTTCCAAGATTACTGAACCACCACAAATACACTTC
    CAACAAGATAACGTATCACAATTCACTGAGTTAATTTCAACAATTGATTTAACAGCTCAA
    CTGGCTACAAATACAACAGATATTCATATAGATGATTTTAATCCGAAAGATCGAAGTCAG
    CGTGCCAAAGTATTTGTTCGATTTAGTAATTTCAATGAACTATTTCAATTTATTTTCAAT
    GAATATTACGATATTAACTTTGAGCACTTACCAAAACCTGTCGTTTTCATTGACGATATT
    CACGATATTGAGATTAGCCAAACGAATTACAACCTGTTAAATAGATGTTTTGAAAAGCTT
    TTCGAAAAAAATATAGGTTTAGCAATCGCTATTAAATCAACACAACAATTCGAAACGATG
    AAGCAATTAATACTAACATTTTTACAAGGCAATCAAGACTATAAGACAAGCAAGAAATTA
    GTTAAATTTATGCTCGTATTTTGCTCTAATTCTATGACAGCAGAAGAAATTCATTTATGT
    CATCTTAAAATTAAAAACAAAAATAAAGAAATTAAATATAGTGTGACAGTCGATGGCTTT
    TTAGAAACTTATTCAACCGTGGAACAAGTTTATGATGTCATGCAGCGTCTTAAATTCCAT
    TATTACTTTATTGATATTGAAAATTCAAAAACTGCAACACATCTTATCACTAAAAACCAA
    CACTATCATCAAACTGACACTCATTTTGAACAGTATAAGAAATTTATTTTAGATTCAGGT
    ATATCATCAACACAATTTGTATATAATAACCTGTCTGTAAGCGGATTTAAATATACTAAT
    GATGGTAAGAATCCAATTCAATTATCTGACATAGTGTATCACTTAATCGCATTATTACGA
    TATGGCGGTGGCATTAGCTATCAATTATTAGATGACCATTCAAATTATATTTCCTTGTAC
    AACAAATATGGTAGCCCCCTACCATTAATGCATTTATATAAAATGTTTAGACCTTTTGTT
    AATGAAGATATTGAAATTACAAATAATTATGTATTGAGTCGTAAAGATAATAACTACCAT
    TTCTTATTATTCAATAAAATTAATGATCGATATATGTCAGACGTAAAACAAGATTTCATT
    TTCCATAATGAATTACCTCAAGACTCTTTGATGATTATTAAAACATTGAATCATGAACAT
    GGTTCAATTCAACATTTGCTTCCAATAAGCGATCAACTTGTTTATATAGAAAAAGAAATT
    TTAGATGAATTAGACAAAACGAATTACCCTAAAACGGAGCTTGCAGTTCAAGAAGAAACT
    GGTCGTACATTTGAACTCAAGTTAAATCACGACGAGGTTAAATATATTTGCTTTAAACCA
    AGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2106

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_02664
  • symbol: SAOUHSC_02664
  • description: transcriptional regulator
  • length: 701
  • theoretical pI: 6.50783
  • theoretical MW: 81881.7
  • GRAVY: -0.269472

⊟Function[edit | edit source]

  • TIGRFAM:
    YSIRK-targeted surface antigen transcriptional regulator (TIGR04094; HMM-score: 54.5)
    and 1 more
    4-hydroxyphenylacetate catabolism regulatory protein HpaA (TIGR02297; HMM-score: 21.6)
  • TheSEED  :
    • AraC family regulatory protein
  • PFAM:
    HTH (CL0123) HTH_18; Helix-turn-helix domain (PF12833; HMM-score: 52.8)
    and 1 more
    HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 39.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.090177
    • TAT(Tat/SPI): 0.001479
    • LIPO(Sec/SPII): 0.034633
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTCQLKIHHTLSTIPSRNINNIMVLFSLTSKLNITINGETKDVSNYIILINHGDIYNINHGENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLISTPTSSSLMGKNIGQSIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAHLSLKDIAMHCNISESYCSNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSELAGFNSHTNFANQFKNYLHFSPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTAQLATNTTDIHIDDFNPKDRSQRAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFIDDIHDIEISQTNYNLLNRCFEKLFEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYKTSKKLVKFMLVFCSNSMTAEEIHLCHLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDVMQRLKFHYYFIDIENSKTATHLITKNQHYHQTDTHFEQYKKFILDSGISSTQFVYNNLSVSGFKYTNDGKNPIQLSDIVYHLIALLRYGGGISYQLLDDHSNYISLYNKYGSPLPLMHLYKMFRPFVNEDIEITNNYVLSRKDNNYHFLLFNKINDRYMSDVKQDFIFHNELPQDSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEILDELDKTNYPKTELAVQEETGRTFELKLNHDEVKYICFKPS

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas [1] [2]
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  2. ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  3. ↑ 3.0 3.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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