PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000107000
• symbol^?: —
• synonym:
• description^?: IS5/IS1182 family transposase

  descriptions from strain specific annotations:

  • IS5/IS1182 family transposase
  • IS1272, transposase
  • IS1272 transposase
  • ISSau3 transposase
  • putative transposase
  • transposase DDE domain protein
• strand^?: -
• coordinates^?: 125375..138638
• synteny block^?: BlockID0000850
• occurrence^?: in 30% of 33 strains

⊟Orthologs

COL:
SACOL0036
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0034
04-02981:
—
08BA02176:
—
11819-97:
MS7_0036
6850:
RSAU_000920
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00330
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00034
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_00350
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
MW0034
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_10432
TW20:
—
USA300_TCH1516:
USA300HOU_0034
VC40:
—

⊟Genome Viewer

COL
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMLKVILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESL
  USA300_FPR3757  ----MILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESL
                      :*******************************************************
  
  COL             FIQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELV
  USA300_FPR3757  FIQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELV
                  ************************************************************
  
  COL             TNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKK
  USA300_FPR3757  TNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKK
                  ************************************************************
  
  COL             YKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT
  USA300_FPR3757  YKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT
                  ************************************************************
  
  COL             NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRT
  USA300_FPR3757  NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRT
                  ************************************************************
  
  COL             PLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRD
  USA300_FPR3757  PLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRD
                  ************************************************************
  
  COL             FKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKI
  USA300_FPR3757  FKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKI
                  ************************************************************
  
  COL             DVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY
  USA300_FPR3757  DVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY
                  ************************************************************
  
  COL             IISIEIVFFHLSKNFMSRTHYDLFFYC
  USA300_FPR3757  IISIEIVFFHLSKNFMSRTHYDLFFYC
                  ***************************