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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN000107000
- symbol?: —
- synonym:
- description?: IS5/IS1182 family transposase
- IS5/IS1182 family transposase
- IS1272, transposase
- IS1272 transposase
- ISSau3 transposase
- putative transposase
- transposase DDE domain protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 125375..138638
- synteny block?: BlockID0000850
- occurrence?: in 30% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
MS7_0036
6850:
RSAU_000920
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00330
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00034
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_00350
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
MW0034
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_10432
TW20:
—
USA300_TCH1516:
USA300HOU_0034
VC40:
—
⊟Genome Viewer[edit | edit source]
COL | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MMLKVILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESL
USA300_FPR3757 ----MILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESL
:*******************************************************
COL FIQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELV
USA300_FPR3757 FIQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELV
************************************************************
COL TNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKK
USA300_FPR3757 TNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKK
************************************************************
COL YKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT
USA300_FPR3757 YKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT
************************************************************
COL NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRT
USA300_FPR3757 NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRT
************************************************************
COL PLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRD
USA300_FPR3757 PLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRD
************************************************************
COL FKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKI
USA300_FPR3757 FKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKI
************************************************************
COL DVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY
USA300_FPR3757 DVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY
************************************************************
COL IISIEIVFFHLSKNFMSRTHYDLFFYC
USA300_FPR3757 IISIEIVFFHLSKNFMSRTHYDLFFYC
***************************