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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000445000
- symbol?: ccrA
- synonym:
- description?: cassette chromosome recombinase A
- cassette chromosome recombinase A
- recombinase RecA
- cassette chromosome recombinase A1
- recombinase family protein
- Cassette chromosome recombinase A3
- resolvase
- resolvase, N terminal domain protein
- resolvase domain-containing protein
- site-specific recombinase
- site-specific recombinase CcrA1
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 453109..454458
- synteny block?: BlockID0001940
- occurrence?: in 64% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0062 (ccrA)
08BA02176:
—
11819-97:
MS7_0070
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_00370 (ccrA)
JH1:
SaurJH1_0050
JH9:
SaurJH9_0049
JKD6008:
SAA6008_00058 (ccrA)
JKD6159:
SAA6159_00039 (ccrA)
LGA251:
SARLGA251_00370 (ccrA1)
M013:
—
MRSA252:
SAR0060 (ccrA)
MSHR1132:
SAMSHR1132_00410
MSSA476:
SAS0033 (ccrA1)
Mu3:
SAHV_0061 (ccrA)
Mu50:
SAV0062 (ccrA)
MW2:
MW0039 (ccrA)
RF122:
—
ST398:
—
T0131:
SAT0131_00056
TCH60:
HMPREF0772_10427 (ccrA)
TW20:
SATW20_00920 (ccrA)
USA300_TCH1516:
USA300HOU_0040 (ccrA)
VC40:
—
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITEL
N315 MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQL
USA300_FPR3757 MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQL
***.******** **********:***:*:**:**:*.*********.*:*.**:*:*:*
COL IQQGQCDVLCCYRLNRLHRNLKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIF
N315 IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIF
USA300_FPR3757 IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF
*******:*******************:****.****************:****:*****
COL ISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYHNGTFTIDTVKAPTVKAVFNY
N315 ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNY
USA300_FPR3757 ISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGTFIINQNESPTVKAVFNY
***************:**::******::*********.****:* *: ::*********
COL YLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
N315 YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
USA300_FPR3757 YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
*::*:******* ** *:.:***:********:******** *****::****:****:*
COL YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASR
N315 YEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASR
USA300_FPR3757 YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASR
**:** * ** *:..*:********** *::******:***:*********:******
COL FVCEFKGINAQELETSVLATCQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLI
N315 FVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLI
USA300_FPR3757 FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLI
***:******* ** .** .*:**:***::*:**: :*::*:****:**.: **.:****
COL EKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQNIIQQRFTLNMLYPYIDEIN
N315 EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH
USA300_FPR3757 EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHIIQNIIQKRFTLNILYPYIETIH
*****. ****************.: :**. :**:: :*****:*****:*****: *:
COL ISKNKSLAGIYFKNEPLNIVKQTMELSIV
N315 ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
USA300_FPR3757 ITKDKNLIGIYFKNEPLNIVNQTMQSSIA
*:*:*.* ************:***: **.