PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000860000
• symbol^?: csa1A
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • staphylococcal tandem lipoprotein
  • tandem lipoprotein
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: +
• coordinates^?: 1128174..1128945
• synteny block^?: BlockID0004210
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
SACOL0079
N315:
SA0092
NCTC8325:
SAOUHSC_00052
Newman:
NWMN_0042
USA300_FPR3757:
SAUSA300_0100
04-02981:
SA2981_0096
08BA02176:
—
11819-97:
MS7_0089
6850:
RSAU_000050
71193:
—
ECT-R 2:
ECTR2_53
ED133:
—
ED98:
SAAV_0044
HO 5096 0412:
—
JH1:
SaurJH1_0087
JH9:
SaurJH9_0084
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_00720
MSSA476:
SAS0072
Mu3:
SAHV_0095
Mu50:
SAV0096
MW2:
MW0071
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0109
VC40:
SAVC_00230

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMKRLNKLVLGIIFLFLVISITAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRD
  N315            MMKRLNKLVLGIIFLFLVISITAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRD
  NCTC8325        MMKRLNKLVLGIIFLFLVISITAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRD
  Newman          MMKRLNKLVLGIIFLFLVISITAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRD
  USA300_FPR3757  MMKRLNKLVLGIIFLFLVISITAGCGIGKEAEVKKSFEKTLSMYPIKNLEDLYDKEGYRD
                  ************************************************************
  
  COL             DQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTNGYYYVDVTKDEDEGKPH
  N315            DQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTNGYYYVDVTKDEDEGKPH
  NCTC8325        DQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTNGYYYVDVTKDEDEGKPH
  Newman          DQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTNGYYYVDVTKDEDEGKPH
  USA300_FPR3757  DQFDKNDKGTWIINSEMVIQPNNEDMVAKGMVLYMNRNTKTTNGYYYVDVTKDEDEGKPH
                  ************************************************************
  
  COL             DNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKNLKNYKDGDISYNPEVP
  N315            DNEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
  NCTC8325        DNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKNLKNYKDGDISYNPEVP
  Newman          DNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKNLKNYKDGDISYNPEVP
  USA300_FPR3757  DNEKRYPVKMVDNKIIPTKEIKDEKIKKEIENFKFFVQYGDFKNLKNYKDGDISYNPEVP
                  ***********************::***************:**:*.:*************
  
  COL             SYSAKYQLTNDDYNVKQLRKRYDIPTSKAPKLLLKGSGNLKGSSVGYKDIEFTFVEKKEE
  N315            SYSAKYQVTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKGE
  NCTC8325        SYSAKYQLTNDDYNVKQLRKRYDIPTSKAPKLLLKGSGNLKGSSVGYKDIEFTFVEKKEE
  Newman          SYSAKYQLTNDDYNVKQLRKRYDIPTSKAPKLLLKGSGNLKGSSVGYKDIEFTFVEKKEE
  USA300_FPR3757  SYSAKYQLTNDDYNVKQLRKRYDIPTSKAPKLLLKGSGNLKGSSVGYKDIEFTFVEKKEE
                  *******:******************.*********:********************* *
  
  COL             NIYFSDSLDYKKSGDV
  N315            NIYFSDSLHLEPSEDK
  NCTC8325        NIYFSDSLDYKKSGDV
  Newman          NIYFSDSLDYKKSGDV
  USA300_FPR3757  NIYFSDSLDYKKSGDV
                  ********. : * *