⊟Summary[edit | edit source]

pan ID^?: SAUPAN001057000
symbol^?: gisB
synonym:
description^?: ABC transporter permease
- ABC transporter permease
- peptide ABC transporter permease
- oligopeptide ABC transporter permease
- oligopeptide ABC transporter permease protein
- putative glutathione transporter, permease compo nent
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane protein
- Nickel ABC transporter, permease subunit NikB
- oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
- oligopeptide ABC transporter membrane protein
- Oligopeptide transport system permease protein
- putative transport system permease
strand^?: +
coordinates^?: 1331532..1333010
synteny block^?: BlockID0005790
occurrence^?: in 100% of 33 strains

⊟Orthologs[edit | edit source]

COL:

SACOL0185

N315:

SA0199 (oppB)

NCTC8325:

SAOUHSC_00168

Newman:

NWMN_0144

USA300_FPR3757:

SAUSA300_0201

04-02981:

SA2981_0207 (oppB)

08BA02176:

C248_0189

11819-97:

MS7_0192

6850:

RSAU_000150

71193:

ST398NM01_0216

ECT-R 2:

ECTR2_167

ED133:

SAOV_0145

ED98:

SAAV_0172

HO 5096 0412:

SAEMRSA15_01650

JH1:

SaurJH1_0197

JH9:

SaurJH9_0191

JKD6008:

SAA6008_00176

JKD6159:

SAA6159_00181

LGA251:

SARLGA251_01710

M013:

M013TW_0186

MRSA252:

SAR0199

MSHR1132:

SAMSHR1132_01720

MSSA476:

SAS0182

Mu3:

SAHV_0205

Mu50:

SAV0206 (truncated-oppB)

MW2:

MW0182 (oppB)

RF122:

SAB0145

ST398:

SAPIG0216

T0131:

SAT0131_00192

TCH60:

HMPREF0772_10300

TW20:

SATW20_02080

USA300_TCH1516:

USA300HOU_0213

VC40:

SAVC_00770

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             ---------------------------------------------------------MYH
N315            -----------------------------------------------MITYLESFKSLYH
NCTC8325        MNCTFRLLTSNKFDMMLCLPIHKCVNLFYTFVYHSNLLKIILQGVIIIITYLESFKSLYH
Newman          MNCTFRLLTSNKFDMMLCLPIHKCVNLFYTFVYHSNLLKIILQGVIIIITYLESFKSLYH
USA300_FPR3757  MNCTFRLLTSNKFDMMLCLPIHKCVNLFYTFVYHSNLLKIILQGVIIIITYLESFKSLYH
                                                                         :**

COL             KAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIEQALHQKYKYLSQQKSST
N315            KAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIERALHQKYKYLSQQKSST
NCTC8325        KAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIEQALHQKYKYLSQQKSST
Newman          KAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIEQALHQKYKYLSQQKSST
USA300_FPR3757  KAFYKFVLSVLSLPIFLYAVIKFFFSAKRKNFYANNSEISEIEQALHQKYKYLSQQKSST
                *******************************************:****************

COL             QIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENVLFHKFIMIKVILALPMFILLTFYLQP
N315            QIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENLLFHKFIMIKVILALPMFILLTIYLQP
NCTC8325        QIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENVLFHKFIMIKVILALPMFILLTFYLQP
Newman          QIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENVLFHKFIMIKVILALPMFILLTFYLQP
USA300_FPR3757  QIHKEALKIFKAQSSNTSSKNIEQAHFSTYFENVLFHKFIMIKVILALPMFILLTFYLQP
                *********************************:*********************:****

COL             LVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEP
N315            LVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEP
NCTC8325        LVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEP
Newman          LVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEP
USA300_FPR3757  LVRYIFERIVMAVIVIIGVIVSVFTILYFSPLDAAYSILGQNATKAQIHQFNVLHHLNEP
                ************************************************************

COL             YFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVLALMVALIIAIPIGIIS
N315            YFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVLALIVALIIAIPIGIIS
NCTC8325        YFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVLALMVALIIAIPIGIIS
Newman          YFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVLALMVALIIAIPIGIIS
USA300_FPR3757  YFIQLWDTIKGVFTFDLGTTYKGNEVVTKAVGERIPITIIVAVLALMVALIIAIPIGIIS
                **********************************************:*************

COL             AMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLV
N315            AMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLV
NCTC8325        AMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLV
Newman          AMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLV
USA300_FPR3757  AMKRNSWLDITLMIIALIGLSIPSFWQGLLFILAFSLKLDILPPSYMPEHPISLILPVLV
                ************************************************************

COL             IGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLV
N315            IGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLV
NCTC8325        IGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLV
Newman          IGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLV
USA300_FPR3757  IGTSIAASITRMTRSSVLEVMRSDYVLTAYAKGLSTTQVVIKHILKNAIIPIVTLVGLLV
                ************************************************************

COL             AELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALI
N315            AELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALI
NCTC8325        AELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALI
Newman          AELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALI
USA300_FPR3757  AELLGGSAVTEQVFNINGIGRYIVQKQLIPDIPAVMGGVVYISIVISLANLIIDIFYALI
                ************************************************************

COL             DPKLRSEINERK
N315            DPKLRSEINERK
NCTC8325        DPKLRSEINERK
Newman          DPKLRSEINERK
USA300_FPR3757  DPKLRSEINERK
                ************

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Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]