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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001138000
- symbol?: scdA
- synonym:
- description?: cell wall biosynthesis protein ScdA
- cell wall biosynthesis protein ScdA
- iron-sulfur cluster repair protein ScdA
- iron-sulfur cluster repair di-iron protein ScdA
- cell division and morphogenesis-related protein
- cell wall metabolism protein
- Cell wall-related protein scdA
- hemerythrin HHE cation binding domain protein
- iron-sulfur cluster repair di-iron protein
- Nitric oxide-dependent regulator DnrN or NorA
- ScdA protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1409032..1409739
- synteny block?: BlockID0006580
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0259 (dnRN)
08BA02176:
C248_0247 (scdA)
11819-97:
MS7_0249 (ric)
6850:
RSAU_000206 (scdA)
71193:
ST398NM01_0272
ECT-R 2:
ECTR2_220
ED133:
SAOV_0199
ED98:
SAAV_0227 (scdA)
HO 5096 0412:
SAEMRSA15_02180 (scdA)
JH1:
SaurJH1_0250
JH9:
SaurJH9_0244
JKD6008:
SAA6008_00233 (scdA)
JKD6159:
SAA6159_00236 (scdA)
LGA251:
SARLGA251_02230 (scdA)
M013:
M013TW_0240
MRSA252:
SAR0256 (scdA)
MSHR1132:
—
MSSA476:
SAS0236
Mu3:
SAHV_0258 (scdA)
Mu50:
SAV0259 (scdA)
MW2:
MW0235 (scdA)
RF122:
SAB0198 (scdA)
ST398:
SAPIG0272
T0131:
SAT0131_00252
TCH60:
HMPREF0772_10243 (ric)
TW20:
SATW20_02610 (scdA)
USA300_TCH1516:
USA300HOU_0270 (scdA)
VC40:
SAVC_01035
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVE
N315 MINKNDIVADIVIDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVE
NCTC8325 MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVE
Newman MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVE
USA300_FPR3757 MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVE
**********:* ***************************:*******************
COL QTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
N315 QTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
NCTC8325 QTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
Newman QTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
USA300_FPR3757 QTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
***********************:************************************
COL TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGELLVKMSEL
N315 TYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDL
NCTC8325 TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGELLVKMSEL
Newman TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGELLVKMSEL
USA300_FPR3757 TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGELLVKMSEL
******.**************************:*****************:******:*
COL TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
N315 TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
NCTC8325 TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
Newman TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
USA300_FPR3757 TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
********************************************