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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001398000
- symbol?: —
- synonym:
- description?: ATPase
- ATPase
- phiPVL ORF41-like protein
- phage protein
- RecF/RecN/SMC N terminal domain-containing protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1681636..1683579
- synteny block?: BlockID0008770
- occurrence?: in 24% of 33 strains
⊟Orthologs[edit | edit source]
COL:
—
N315:
—
NCTC8325:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_0328
JH9:
SaurJH9_0319
JKD6008:
SAA6008_02041
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02122
TCH60:
—
TW20:
SATW20_03390
USA300_TCH1516:
USA300HOU_1992
VC40:
—
⊟Genome Viewer[edit | edit source]
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
Newman ----MKINKLTISNFAGIKEVTFNFDGKDAKIYGNNATGKTTTATALQWLLFDKGLDGST
USA300_FPR3757 MRKDMKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTTATALQWLLFDKGLDGST
**************** .**************************************
Newman KSFNPVPLNEKNAENYELIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTK
USA300_FPR3757 KSFNPVPLNEKNEENYELIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTK
************ ***********************************************
Newman KQYINDESIKVKDYKARIDELIDEDVFKLITNPQAFNLLDWKKRRSLLFEIAKPINDEDV
USA300_FPR3757 KQYINDESIKVKDYKARIDELIDEDVFKLITNPQAFNLLDWKKRRSLLFEIAKPINDEDV
************************************************************
Newman IKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDND
USA300_FPR3757 IKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDND
************************************************************
Newman RYAIIKQEIEQLENERIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHALTNE
USA300_FPR3757 RYAIIKQEIEQLENERIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHALTNE
************************************************************
Newman LHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKSKNQKFEHLDDNVCS
USA300_FPR3757 LHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNVCS
*********************************************:******:*******
Newman CCGQQLPTEQVNEAREKALQKFNVKKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNN
USA300_FPR3757 CCGQKLPVEQVDMAREKALQKFNASKSKELETIQTSINHIISEGKKIKLIIEKLEDDNNN
****:**.***: **********..*********************** ***********
Newman LQIKINEAEERSARIQNKINKLKTTHVDVTQTDEYKAVMLEINEINQKRSNIRKTIQDKV
USA300_FPR3757 LQIKINEAEERSARIQNKINKLKTTHVDVTQTDEYKAVMLEINEINQKRSNIRKTIQDKV
************************************************************
Newman SGIDDKISELTQEKSEIEVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE
USA300_FPR3757 SGIDDKISELTQEKSEIEVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE
************************************************************
Newman FTTTKVKMLTENINNEFDIAEFKLFNTLVNGELEETCSTTVNGVEYDSGLNNASRINVGL
USA300_FPR3757 FTTTKVKMLTENINNEFEIAEFKLFNTLVNGELEETCSTTVNGVEYDSGLNNASRINVGL
*****************:******************************************
Newman DIINTLSKHFKVTAPIFIDNAESVTELIKTESQQIQLIVNEQDKKLRMETI
USA300_FPR3757 DIINTLSKHFKVTAPIFIDNAESVTELIKTESQQIQLIVNEQDKKLRMETI
***************************************************