From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN001832000
  • symbol?:
  • synonym:
  • description?: ATP-dependent Clp protease ClpP

      descriptions from strain specific annotations:

    • ATP-dependent Clp protease ClpP
    • phiSLT ORF257-like protein prophage protease
    • prophage L54a, Clp protease
    • scaffolding protease
    • bacteriophage protease
    • clp protease family protein
    • peptidase S14, ClpP
    • peptidase S14 ClpP
    • phage Clp protease
    • phage protease
  • strand?: -
  • coordinates?: 2277313..2278086
  • synteny block?: BlockID0012080
  • occurrence?: in 44% of 34 strains

hmp : serogroup A prophage head maturation protease [1]

Serogroup A prophage capsids consist of a major capsid-scaffolding fusion protein that requires cleavage to generate mature capsids. Head maturation protease removes the serogroup A mcp δ domain by proteolytic cleavage. This crotonase-like paralogue specifically cleaves serogroup A mcp between lysine-128 and leucine-129.

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0351
    11819-97:
    MS7_1466
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2030
    HO 5096 0412:
    SAEMRSA15_13720
    JH1:
    SaurJH1_1081
    JH9:
    SaurJH9_1061
    JKD6008:
    JKD6159:
    JSNZ:
    LGA251:
    M013:
    MRSA252:
    SAR1517
    MSHR1132:
    MSSA476:
    SAS0934
    Mu3:
    Mu50:
    MW2:
    MW1399
    RF122:
    ST398:
    SAPIG0375
    T0131:
    TCH60:
    HMPREF0772_11692
    TW20:
    USA300_TCH1516:
    USA300HOU_1451
    VC40:

Genome Viewer[edit | edit source]

COL
NCTC8325
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
    NCTC8325        MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
    USA300_FPR3757  MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
                    ************************************************************

    COL             SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
    NCTC8325        SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
    USA300_FPR3757  SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
                    ************************************************************

    COL             TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
    NCTC8325        TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
    USA300_FPR3757  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
                    ************************************************************

    COL             EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
    NCTC8325        EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
    USA300_FPR3757  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
                    ************************************************************

    COL             REKIKRECEILKMTMNY
    NCTC8325        REKIKRECEILKMTMNY
    USA300_FPR3757  REKIKRECEILKMTMNY
                    *****************

  1. R L Duda, J Hempel, H Michel, J Shabanowitz, D Hunt, R W Hendrix
    Structural transitions during bacteriophage HK97 head assembly.
    J Mol Biol: 1995, 247(4);618-35
    [PubMed:7723019] [WorldCat.org] [DOI] (P p)
    F Desiere, S Lucchini, H Brüssow
    Comparative sequence analysis of the DNA packaging, head, and tail morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage Sfi21.
    Virology: 1999, 260(2);244-53
    [PubMed:10417259] [WorldCat.org] [DOI] (P p)