PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001832000
• symbol^?: —
• synonym:
• description^?: ATP-dependent Clp protease ClpP

  descriptions from strain specific annotations:

  • ATP-dependent Clp protease ClpP
  • prophage L54a, Clp protease
  • scaffolding protease
  • phiSLT ORF257-like protein prophage protease
  • bacteriophage protease
  • clp protease family protein
  • peptidase S14, ClpP
  • peptidase S14 ClpP
  • phage Clp protease
  • phage protease
• strand^?: -
• coordinates^?: 2277313..2278086
• synteny block^?: BlockID0012080
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
SACOL0369
N315:
—
NCTC8325:
SAOUHSC_01536
Newman:
—
USA300_FPR3757:
SAUSA300_1402
04-02981:
—
08BA02176:
C248_0351
11819-97:
MS7_1466
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2030
HO 5096 0412:
SAEMRSA15_13720
JH1:
SaurJH1_1081
JH9:
SaurJH9_1061
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1517
MSHR1132:
—
MSSA476:
SAS0934
Mu3:
—
Mu50:
—
MW2:
MW1399
RF122:
—
ST398:
SAPIG0375
T0131:
—
TCH60:
HMPREF0772_11692
TW20:
—
USA300_TCH1516:
USA300HOU_1451
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
  NCTC8325        MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
  USA300_FPR3757  MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
                  ************************************************************
  
  COL             SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
  NCTC8325        SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
  USA300_FPR3757  SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
                  ************************************************************
  
  COL             TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
  NCTC8325        TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
  USA300_FPR3757  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
                  ************************************************************
  
  COL             EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
  NCTC8325        EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
  USA300_FPR3757  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
                  ************************************************************
  
  COL             REKIKRECEILKMTMNY
  NCTC8325        REKIKRECEILKMTMNY
  USA300_FPR3757  REKIKRECEILKMTMNY
                  *****************