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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002104000
- symbol?: ssl1
- description?: staphylococcal superantigen-like protein 1
- staphylococcal superantigen-like protein 1
- superantigen-like protein
- superantigen-like protein SSL1
- Exotoxin 6
- exotoxin
- Staphylococcal enterotoxin-like toxin
- staphylococcal exotoxin
- superantigen-like protein 11
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2587971..2588748
- synteny block?: BlockID0014100
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0396 (set6)
08BA02176:
C248_0472 (set6)
11819-97:
MS7_0397
6850:
RSAU_000352
71193:
ST398NM01_0490
ECT-R 2:
ECTR2_357
ED133:
SAOV_0440
ED98:
SAAV_0365
HO 5096 0412:
SAEMRSA15_03530
JH1:
SaurJH1_0457
JH9:
SaurJH9_0445
JKD6008:
SAA6008_00422 (set6)
JKD6159:
SAA6159_00375
LGA251:
SARLGA251_03600
M013:
M013TW_0382
MRSA252:
SAR0422
MSHR1132:
SAMSHR1132_03720
MSSA476:
SAS0384
Mu3:
SAHV_0419 (set6)
Mu50:
SAV0422 (set6)
MW2:
MW0382 (set16)
RF122:
SAB0376 (set11)
ST398:
SAPIG0490
T0131:
SAT0131_00457
TCH60:
HMPREF0772_10095
TW20:
SATW20_04960
USA300_TCH1516:
USA300HOU_0422 (set3)
VC40:
SAVC_01735
⊟Genome Viewer[edit | edit source]
| COL chromosome | |
| N315 chromosome | |
| NCTC8325 chromosome | |
| Newman chromosome | |
| USA300_FPR3757 chromosome |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
N315 MKFKAIAKASLALGMLATGVITSNVQSVQAKTEVKQQSESELKHYYNKPVLERKNVTGYK
NCTC8325 MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
Newman MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
USA300_FPR3757 MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
*******************************:*****************:********:*
COL YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
N315 YTEKGKDYIDVIVDNQYSQISLVGSDKDKFKDGDNSNIDVFILREGDSRQATNYSIGGVT
NCTC8325 YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
Newman YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
USA300_FPR3757 YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
**::**.*::* *.:*:*:*:*:**********:**************************
COL KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
N315 KTNSQPFIDYIHTPILEIKKGKEEPQSSLYQIYKEDISLKELDYRLRERAIKQHGLYSNG
NCTC8325 KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
Newman KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
USA300_FPR3757 KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
*:** :****:********.:*: ..:* * ***************************
COL LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
N315 LKQGQITITMKDGKSHTIDLSQKLEKERMGDSIDGRQIQKILVEMK
NCTC8325 LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
Newman LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
USA300_FPR3757 LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
**********:**.:***************:**** :*:*******