PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002104000
• symbol^?: ssl1
• synonym:
• description^?: staphylococcal superantigen-like protein 1

  descriptions from strain specific annotations:

  • staphylococcal superantigen-like protein 1
  • superantigen-like protein
  • superantigen-like protein SSL1
  • Exotoxin 6
  • exotoxin
  • Staphylococcal enterotoxin-like toxin
  • staphylococcal exotoxin
  • superantigen-like protein 11
• strand^?: +
• coordinates^?: 2587971..2588748
• synteny block^?: BlockID0014100
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0468
N315:
SA0382 (set6)
NCTC8325:
SAOUHSC_00383
Newman:
NWMN_0388 (set1nm)
USA300_FPR3757:
SAUSA300_0395
04-02981:
SA2981_0396 (set6)
08BA02176:
C248_0472 (set6)
11819-97:
MS7_0397
6850:
RSAU_000352
71193:
ST398NM01_0490
ECT-R 2:
ECTR2_357
ED133:
SAOV_0440
ED98:
SAAV_0365
HO 5096 0412:
SAEMRSA15_03530
JH1:
SaurJH1_0457
JH9:
SaurJH9_0445
JKD6008:
SAA6008_00422 (set6)
JKD6159:
SAA6159_00375
LGA251:
SARLGA251_03600
M013:
M013TW_0382
MRSA252:
SAR0422
MSHR1132:
SAMSHR1132_03720
MSSA476:
SAS0384
Mu3:
SAHV_0419 (set6)
Mu50:
SAV0422 (set6)
MW2:
MW0382 (set16)
RF122:
SAB0376 (set11)
ST398:
SAPIG0490
T0131:
SAT0131_00457
TCH60:
HMPREF0772_10095
TW20:
SATW20_04960
USA300_TCH1516:
USA300HOU_0422 (set3)
VC40:
SAVC_01735

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
  N315            MKFKAIAKASLALGMLATGVITSNVQSVQAKTEVKQQSESELKHYYNKPVLERKNVTGYK
  NCTC8325        MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
  Newman          MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
  USA300_FPR3757  MKFKAIAKASLALGMLATGVITSNVQSVQAKAEVKQQSESELKHYYNKPILERKNVTGFK
                  *******************************:*****************:********:*
  
  COL             YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
  N315            YTEKGKDYIDVIVDNQYSQISLVGSDKDKFKDGDNSNIDVFILREGDSRQATNYSIGGVT
  NCTC8325        YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
  Newman          YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
  USA300_FPR3757  YTDEGKHYLEVTVGQQHSRITLLGSDKDKFKDGENSNIDVFILREGDSRQATNYSIGGVT
                  **::**.*::* *.:*:*:*:*:**********:**************************
  
  COL             KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
  N315            KTNSQPFIDYIHTPILEIKKGKEEPQSSLYQIYKEDISLKELDYRLRERAIKQHGLYSNG
  NCTC8325        KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
  Newman          KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
  USA300_FPR3757  KSNSVQYIDYINTPILEIKKDNEDVLKDFYYISKEDISLKELDYRLRERAIKQHGLYSNG
                  *:**  :****:********.:*:  ..:* * ***************************
  
  COL             LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
  N315            LKQGQITITMKDGKSHTIDLSQKLEKERMGDSIDGRQIQKILVEMK
  NCTC8325        LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
  Newman          LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
  USA300_FPR3757  LKQGQITITMNDGTTHTIDLSQKLEKERMGESIDGTKINKILVEMK
                  **********:**.:***************:**** :*:*******