PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002130000
• symbol^?: —
• synonym:
• description^?: FKLRK protein

  descriptions from strain specific annotations:

  • FKLRK protein
  • surface protein, putative
• strand^?: +
• coordinates^?: 2623797..2626382
• synteny block^?: BlockID0014360
• occurrence^?: in 73% of 33 strains

⊟Orthologs

COL:
SACOL0479
N315:
SA0394
NCTC8325:
SAOUHSC_00400
Newman:
NWMN_0401
USA300_FPR3757:
SAUSA300_0408
04-02981:
SA2981_0410
08BA02176:
—
11819-97:
—
6850:
RSAU_000365
71193:
—
ECT-R 2:
ECTR2_369
ED133:
SAOV_0454
ED98:
SAAV_0377
HO 5096 0412:
—
JH1:
SaurJH1_0469
JH9:
SaurJH9_0457
JKD6008:
SAA6008_00437
JKD6159:
—
LGA251:
SARLGA251_03720
M013:
M013TW_0395
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0397
Mu3:
SAHV_0432
Mu50:
SAV0434
MW2:
MW0395
RF122:
SAB0387
ST398:
—
T0131:
SAT0131_00473
TCH60:
—
TW20:
SATW20_05110
USA300_TCH1516:
USA300HOU_0436
VC40:
SAVC_01800

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSENFKLRKMKVGLVSVAITMLYIMTNGQAEASENQNALISNINVDNQEKQNNVNQAVQP
  N315            MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASE------TNQKVSTNQESKAVSQTEQN
  NCTC8325        MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASENQNALISNINVDNQEKQNNVNQAVQP
  Newman          MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASENQNALISNINVDNQEKQNNVNQAVQP
  USA300_FPR3757  MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASENQNALISNINVDNQEKQNNVNQAVQP
                  * ********************************      :* :*..:::.: *.*: * 
  
  COL             QNNTNETSKVPANFVKLNDIKPGDTSIQGTTLPNQFILLTIDKKDVSSVEDSDSSFVMSD
  N315            SKET-KAAESSKNFVNLDPIKPGAQKVTGTTLPNHIILLNIDGKSADSVEGGYGDFITAN
  NCTC8325        QNNTNETSKVPANFVKLNDIKPGDTSIQGTTLPNQFILLTIDKKDVSSVEDSDSSFVMSD
  Newman          QNNTNETSKVPANFVKLNDIKPGDTSIQGTTLPNQFILLTIDKKDVSSVEDSDSSFVMSD
  USA300_FPR3757  QNNTNETSKVPANFVKLNDIKPGDTSIQGTTLPNQFILLTIDKKDVSSVEDSDSSFVMSD
                  .::* :::: . ***:*: ****  .: ******::***.** *...***.. ..*: ::
  
  COL             KDGNFKYDLNGRKIVHNQEIEVSSSDPYLGDDEEDEEVEETSTEEVGAEEESTEAKATYT
  N315            DKGEFEYPLNNRKIVHNQEIEVSSSSPDLGDDEEDEEVEESSTEKAGAEEESTDAKATYT
  NCTC8325        KDGNFKYDLNGRKIVHNQEIEVSSSDPYLGDDEEDEEVEETSTEEVGAEEESTEAKATYT
  Newman          KDGNFKYDLNGRKIVHNQEIEVSSSDPYLGDDEEDEEVEETSTEEVGAEEESTEAKATYT
  USA300_FPR3757  KDGNFKYDLNGRKIVHNQEIEVSSSDPYLGDDEEDEEVEETSTEEVGAEEESTEAKATYT
                  ..*:*:* **.**************.* ************:***:.*******:******
  
  COL             TPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFETN
  N315            TPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFEER
  NCTC8325        TPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFETN
  Newman          TPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFETN
  USA300_FPR3757  TPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFETN
                  ********************************************************** .
  
  COL             ANGGPNKEEAKSGSEGIWMPIDDKGYFNFDFKTKRFDDLELKKNDEISLTFAPDDEDEAL
  N315            AKGGISKEDTKASSDGVWMPINEKGYFDFDFKKNPFDNLELKKNDEISLTFAPDDEDEAL
  NCTC8325        ANGGPNKEEAKSGSEGIWMPIDDKGYFNFDFKTKRFDDLELKKNDEISLTFAPDDEDEAL
  Newman          ANGGPNKEEAKSGSEGIWMPIDDKGYFNFDFKTKRFDDLELKKNDEISLTFAPDDEDEAL
  USA300_FPR3757  ANGGPNKEEAKSGSEGIWMPIDDKGYFNFDFKTKRFDDLELKKNDEISLTFAPDDEDEAL
                  *:** .**::*:.*:*:****::****:****.: **:**********************
  
  COL             KSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDLHVDEIYGSLYHTEKGKGILD
  N315            KSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDIHVDEIYGSLYHTEKGKGILD
  NCTC8325        KSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDLHVDEIYGSLYHTEKGKGILD
  Newman          KSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDLHVDEIYGSLYHTEKGKGILD
  USA300_FPR3757  KSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDLHVDEIYGSLYHTEKGKGILD
                  ***************************************:********************
  
  COL             KEGTKVIKGKTKFANAVVKVDSELGEGQEFPDLQVDEKGEFSFDVDHAGFRLQNGETLNF
  N315            KQGTKEITGKTKFANAVVKVYSDLGDAQLFPDIQVDENGKFSFDAEKAGFRLQNGETLNF
  NCTC8325        KEGTKVIKGKTKFANAVVKVDSELGEGQEFPDLQVDEKGEFSFDVDHAGFRLQNGETLNF
  Newman          KEGTKVIKGKTKFANAVVKVDSELGEGQEFPDLQVDEKGEFSFDVDHAGFRLQNGETLNF
  USA300_FPR3757  KEGTKVIKGKTKFANAVVKVDSELGEGQEFPDLQVDEKGEFSFDVDHAGFRLQNGETLNF
                  *:*** *.************ *:**:.* ***:****:*:****.::*************
  
  COL             TVVDPITGELLSGNFVSKNIDIYESPEEKADREFDERMENTPAYHKLHGDKIVGYDTNGF
  N315            AVVKPITGDLLHQGFVSKYIDVYESPEEKKEREFEEKLENTPAYHKLHGDKIVGYDVQGN
  NCTC8325        TVVDPITGELLSGNFVSKNIDIYESPEEKADREFDERMENTPAYHKLHGDKIVGYDTNGF
  Newman          TVVDPITGELLSGNFVSKNIDIYESPEEKADREFDERMENTPAYHKLHGDKIVGYDTNGF
  USA300_FPR3757  TVVDPITGELLSGNFVSKNIDIYESPEEKADREFDERMENTPAYHKLHGDKIVGYDTNGF
                  :**.****:**  .**** **:******* :***:*::******************.:* 
  
  COL             PITWFYPLGEKKVERKAPKLEK
  N315            PSTWFYPLGEKKVERTTPKLEK
  NCTC8325        PITWFYPLGEKKVERKAPKLEK
  Newman          PITWFYPLGEKKVERKAPKLEK
  USA300_FPR3757  PITWFYPLGEKKVERKAPKLEK
                  * *************.:*****