PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002145000
• symbol^?: lpl8
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • lipoprotein, putative
  • putative lipoprotein
  • staphylococcal tandem lipoprotein
  • staphylococcus tandem lipoproteins family protein
  • Tandem lipoprotein within Pathogenicity island
• strand^?: +
• coordinates^?: 2649037..2651842
• synteny block^?: BlockID0014510
• occurrence^?: in 64% of 33 strains

⊟Orthologs

COL:
SACOL0485
N315:
SA0404 (lpl8)
NCTC8325:
SAOUHSC_00404
Newman:
NWMN_0411 (lpl8nm)
USA300_FPR3757:
SAUSA300_0418
04-02981:
SA2981_0420 (lpl8)
08BA02176:
—
11819-97:
—
6850:
RSAU_000369
71193:
—
ECT-R 2:
ECTR2_379
ED133:
SAOV_0457
ED98:
SAAV_0387
HO 5096 0412:
—
JH1:
SaurJH1_0479
JH9:
SaurJH9_0467
JKD6008:
SAA6008_00447 (lpl8_1)
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR0444
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_0442 (lpl8)
Mu50:
SAV0444 (lpl8)
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_00482
TCH60:
HMPREF0772_10078
TW20:
SATW20_05130
USA300_TCH1516:
USA300HOU_0446
VC40:
SAVC_01815

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKSIKRIGLCISLLILIIFVTSCDGDNKIIGDSKEEQIKKSFAKTLDIYPIKNLEDLYDK
  N315            MKSIKRIGLCISLLILIIFATSC-GSNKITGDSKEEQIKKSFAKSLDKYPTENLEEFYDK
  NCTC8325        MKSIKRIGLCISLLILIIFVTSCDGDNKIIGDSKEEQIKKSFAKTLDIYPIKNLEDLYDK
  Newman          MKSIKRIGLCISLLILIIFVTSCDGDNKIIGDSKEEQIKKSFAKTLDIYPIKNLEDLYDK
  USA300_FPR3757  MKSIKRIGLCISLLILIIFVTSCDGDNKIIGDSKEEQIKKSFAKTLDIYPIKNLEDLYDK
                  *******************.*** *.*** **************:** ** :***::***
  
  COL             EGYRDGEFKKDDKGTWLIRSEMKIQLKGENLESRGAVLEINRNTRTAKGHYIVREVVEDS
  N315            EGYRDGEFEKDDKGTWLIRSEMKIQLKGENLESRGAVIEINRNTRTAKGNYIVREVVEDS
  NCTC8325        EGYRDGEFKKDDKGTWLIRSEMKIQLKGENLESRGAVLEINRNTRTAKGHYIVREVVEDS
  Newman          EGYRDGEFKKDDKGTWLIRSEMKIQLKGENLESRGAVLEINRNTRTAKGHYIVREVVEDS
  USA300_FPR3757  EGYRDGEFKKDDKGTWLIRSEMKIQLKGENLESRGAVLEINRNTRTAKGHYIVREVVEDS
                  ********:****************************:***********:**********
  
  COL             DGMTHNHTKRYPVKMENNKMIPLKPIDDEKVKKEIEEFNFFVQYGNFKELENYKEDEVSY
  N315            DGMTHNHTKRYPVKMENNKMIPLKSIDDEKVKKEIEEFKFFVQYGNFKELENYKEDEVSY
  NCTC8325        DGMTHNHTKRYPVKMENNKMIPLKPIDDEKVKKEIEEFNFFVQYGNFKELENYKEDEVSY
  Newman          DGMTHNHTKRYPVKMENNKMIPLKPIDDEKVKKEIEEFNFFVQYGNFKELENYKEDEVSY
  USA300_FPR3757  DGMTHNHTKRYPVKMENNKMIPLKPIDDEKVKKEIEEFNFFVQYGNFKELENYKEDEVSY
                  ************************.*************:*********************
  
  COL             NPEVPIYSAKYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFI
  N315            NPEVPIYSAQYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFV
  NCTC8325        NPEVPIYSAKYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFI
  Newman          NPEVPIYSAKYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFI
  USA300_FPR3757  NPEVPIYSAKYQLKNSDYNVEQLRKRYNIPTQKAPKLLLKGSGNLKGSSVGYKNIEFTFI
                  *********:*************************************************:
  
  COL             ENKEENIYFTDSIYFNPSEDK
  N315            ENKEENIYFTDSVYFNPSEDK
  NCTC8325        ENKEENIYFTDSIYFNPSEDK
  Newman          ENKEENIYFTDSIYFNPSEDK
  USA300_FPR3757  ENKEENIYFTDSIYFNPSEDK
                  ************:********