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Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN002159000
  • symbol?: psmα4
  • description?: Phenol-soluble modulin alpha 4 peptide

      descriptions from strain specific annotations:

    • Phenol-soluble modulin alpha 4 peptide
    • phenol-soluble modulin alpha 4
    • cytolytic toxin PSM alpha4
  • strand?: -
  • coordinates?: 2667053..2667115
  • synteny block?: BlockID0014630
  • occurrence?: in 27% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL0493.1 (psmα4)
    N315:
    SA0410.2 (psmα4)
    NCTC8325:
    SAOUHSC_00411.1 (psmα4)
    Newman:
    NWMN_0417.1 (psmα4)
    USA300_FPR3757:
    SAUSA300_0424.1 (psmα4)
    04-02981:
    08BA02176:
    11819-97:
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_09900
    JKD6159:
    SAA6159_02608
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    SAMSHR1132_03961
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_05201
    USA300_TCH1516:
    VC40:

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MAIVGTIIKIIKAIIDIFAK
    N315            MAIVGTIIKIIKAIIDIFAK
    NCTC8325        MAIVGTIIKIIKAIIDIFAK
    Newman          MAIVGTIIKIIKAIIDIFAK
    USA300_FPR3757  MAIVGTIIKIIKAIIDIFAK
                    ********************